PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast04G343700.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | MYB_related | ||||||||
Protein Properties | Length: 238aa MW: 26483.6 Da PI: 8.4427 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 24.9 | 4.8e-08 | 185 | 233 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqk 46 r++W + ++ l ++v+++G+g+Wk I + R+ + k+++++ Brast04G343700.1.p 185 RKNWIEMQEKTLMEGVEKYGKGNWKEIKIAYPdvfGDRSTVDMKDKFRN 233 789*****************************99999**9999999998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 9.187 | 180 | 237 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.6E-9 | 181 | 235 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.28E-11 | 182 | 235 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.4E-4 | 184 | 237 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.1E-7 | 185 | 234 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 6.68E-16 | 186 | 236 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 238 aa Download sequence Send to blast |
ADLPPSTLEI AADRIAGAGA LHTWANADQD TRQKLRLLES MELDILGKLG PDPSKVDKGA 60 STSGADEADL TRESSKSDHD QEGCTRQDPA KRTTDAQLTQ NLLTSATIKG KDKATSSYVT 120 GLVAPDNHKS HPVIGSKRGL MERSHTTTVY EWDDLGDSDH ERVPHKRQLP TYKKKPGPSF 180 PHKSRKNWIE MQEKTLMEGV EKYGKGNWKE IKIAYPDVFG DRSTVDMKDK FRNMERR* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 173 | 185 | KKPGPSFPHKSRK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast04G343700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003559737.1 | 1e-135 | uncharacterized protein LOC100834855 | ||||
Refseq | XP_010233480.1 | 1e-135 | uncharacterized protein LOC100834855 | ||||
TrEMBL | I1GQT3 | 1e-134 | I1GQT3_BRADI; Uncharacterized protein | ||||
STRING | BRADI1G16355.1 | 1e-135 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13998 | 22 | 24 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G15720.1 | 2e-10 | TRF-like 5 |
Link Out ? help Back to Top | |
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Phytozome | Brast04G343700.1.p |