PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast04G340300.2.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family G2-like
Protein Properties Length: 278aa    MW: 30518.7 Da    PI: 11.2246
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast04G340300.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like924.8e-29173222251
             G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 
                         pr+rWt++LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ
  Brast04G340300.2.p 173 PRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQ 222
                         9************************************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.56E-13170223IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.0E-25171222IPR009057Homeodomain-like
TIGRFAMsTIGR015571.1E-20173222IPR006447Myb domain, plants
PfamPF002499.5E-7174224IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0048481Biological Processplant ovule development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MELFPRQPDL ARPTSSSSSA SSPPAPAPAW RRPLDTTTAG NNMDQFGQLG FWRATDSSKD  60
DLRLRAAPPS NGQLLSSAIA GGYKQQQQLN SISHGCYPNG NNHHYYERMN ALLKPIRGVP  120
IYHHHPFQLQ QRQQQQQQKN MVMGSRSINS GAGGFLSSSS SRFPAGRRSL RAPRMRWTTT  180
LHARFVHAVE LLGGHERATP KSVLELMDVK DLTLAHVKSH LQDNLKVLIT DQRVRSLTRA  240
YRKPSAPAGS VQIKMEPVQI LAAATLTMVC GATLQAG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A6e-14174222351Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B6e-14174222351Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C6e-14174222351Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D6e-14174222351Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00174DAPTransfer from AT1G32240Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast04G340300.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP1016682e-43FP101668.1 Phyllostachys edulis cDNA clone: bphyst006o10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010233652.12e-96probable transcription factor KAN2 isoform X1
TrEMBLA0A2K2CUG21e-131A0A2K2CUG2_BRADI; Uncharacterized protein
STRINGBRADI3G00550.13e-84(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32240.14e-30G2-like family protein