PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast04G340300.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family G2-like
Protein Properties Length: 360aa    MW: 39336.7 Da    PI: 9.8557
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast04G340300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like102.13.4e-32173226255
             G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                         pr+rWt++LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+
  Brast04G340300.1.p 173 PRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 226
                         9****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.79E-15170227IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.3E-28171227IPR009057Homeodomain-like
TIGRFAMsTIGR015571.6E-23173227IPR006447Myb domain, plants
PfamPF002492.3E-7174225IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0048481Biological Processplant ovule development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MELFPRQPDL ARPTSSSSSA SSPPAPAPAW RRPLDTTTAG NNMDQFGQLG FWRATDSSKD  60
DLRLRAAPPS NGQLLSSAIA GGYKQQQQLN SISHGCYPNG NNHHYYERMN ALLKPIRGVP  120
IYHHHPFQLQ QRQQQQQQKN MVMGSRSINS GAGGFLSSSS SRFPAGRRSL RAPRMRWTTT  180
LHARFVHAVE LLGGHERATP KSVLELMDVK DLTLAHVKSH LQMYRTIKST DKPTVSSGQL  240
EGFDNGSAGE ISDESLPETL STRRISTDQN GTSANSRSSN TYNGLWSNSS SRVGCPELGS  300
NTTEIGKLHH KEEATAPSKS IEISAEMNAS CISYQTSSPP AQPNLEFTLG IRTTLHTID*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A4e-16174228357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B4e-16174228357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C4e-16174228357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D4e-16174228357Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that regulates lateral organ polarity. Promotes abaxial cell fate during lateral organd formation. Functions with KAN1 in the specification of polarity of the ovule outer integument. {ECO:0000269|PubMed:11525739, ECO:0000269|PubMed:15286295, ECO:0000269|PubMed:16623911, ECO:0000269|PubMed:17307928}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00174DAPTransfer from AT1G32240Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast04G340300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP1016689e-47FP101668.1 Phyllostachys edulis cDNA clone: bphyst006o10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010233652.10.0probable transcription factor KAN2 isoform X1
SwissprotQ9C6162e-49KAN2_ARATH; Probable transcription factor KAN2
TrEMBLA0A0Q3EZE00.0A0A0Q3EZE0_BRADI; Uncharacterized protein
STRINGBRADI3G00550.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP47213665
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32240.18e-48G2-like family protein
Publications ? help Back to Top
  1. Machida C,Nakagawa A,Kojima S,Takahashi H,Machida Y
    The complex of ASYMMETRIC LEAVES (AS) proteins plays a central role in antagonistic interactions of genes for leaf polarity specification in Arabidopsis.
    Wiley Interdiscip Rev Dev Biol, 2015 Nov-Dec. 4(6): p. 655-71
    [PMID:26108442]