PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast04G331800.2.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MYB_related
Protein Properties Length: 1165aa    MW: 129686 Da    PI: 9.1645
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast04G331800.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.33e-074580340
                        SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS
     Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40
                         W+++E e+++ a +++G++ Wk++a  +   Rt  ++
  Brast04G331800.2.p 45 QWSKDELERFYGAYRKYGKD-WKKVAGAVH-DRTSDMV 80
                        6*****************99.******999.9997665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.79E-93789IPR009057Homeodomain-like
PfamPF002491.3E-54584IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-44584IPR009057Homeodomain-like
CDDcd001670.002934680No hitNo description
SMARTSM011355.3E-57651752IPR033471DIRP domain
PfamPF065841.7E-32651751IPR033471DIRP domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0016592Cellular Componentmediator complex
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1165 aa     Download sequence    Send to blast
MSSTRKVRNV NKRYAKINED WQDKEATTVH KSKVRKKKLS DLGSQWSKDE LERFYGAYRK  60
YGKDWKKVAG AVHDRTSDMV EALYNMNRAY LSLPEGTATA AGLIAMMTDH YNILDGSNSD  120
HESNDSPKTS RKPQKRGRAK LQSVSKTSDT RYADLLQSQP SSSNYGCLSL LKKKRSGGNR  180
PRAVGKRTPR VPVASMYHRD DRIGPANRQS KPDANNGDDE GAHVAALALA EVGQRGSSPQ  240
VSQTPGRSSD RLFLSPVKSI DRKNADSDMG SSKLHGFQVD ADYPEGSLGS REAETGDYPK  300
DASYFMNNGG SASGKSKQKI KKSQRRKKKA AQKSDDQLED DREACSGTEE GHSARKAKDE  360
SEVDTVGTSW PSNKSNKRSR QLFFDDESSA LDALYTLADL SVNILQPSSI AESESSAHIK  420
DESRDNDFDD KPSVPAALSL FEKKETSRKM KKVKRQSEIA SNEMVTRKKA RLSKDPHHDE  480
GAISEVKQQD YNVKKEKKKR KSATGKIPKD EKKDEKNTLN DIEKTEVSAE EGKASSNKGR  540
HTRVSPVSKQ NKSKAQESSP AHADSGKEAM DIVETTQNAT TQQSDLTSKA RSRRKLGILK  600
ALAPECKPAE GTDGSHDNVS YPVNNVIDLK DKLSHCLSSR FLRRWCMSEW FYSAIDYPWF  660
AKSEFVEYLN HVKLGHVPRL TRVEWGVIRS SLGKPRRLSK QFLHEEREKL FKYRDSVRQH  720
YAELRSGVRE GLPTDLARPL AVGQRVIACH PKTRELHDGS VLTVDHHHCR VQFDRPELGV  780
EFVMDIDCMP LHPLENFPES LRRQNIVNKY YSSFSEVKFE DRSREYGGGG VARFASNGDT  840
FDTHAKAAVN EVTGAAQEAM YSQPCTLSQI QEREADIKAL AELSRSLDKK EALLVELRHM  900
NEEVSAKQKD GETISELEHF RKQYAMVLVQ LRDSNDHVAS ALLSLRQRNT FHEHPAQSYP  960
KSTDNGGALN GKLEPFNHFG YINQESGSQV MEIIETSRCR AKTMVDVAIQ AMCKVSEGEN  1020
AFAKIGEALD NLSIRGTGSG SSILGIRRIP PDSGQANSTC QDNSTSGRFD PATTNTSSPR  1080
MTNGYDSEAQ FPSELISSCV ATVLMIQNCT EKQCHPAEVA HILDSALSRL QPCSSQNVPI  1140
FREIEMCMGI IKNQMLALIP TPSG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1316327KQKIKKSQRRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast04G331800.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010233695.10.0protein ALWAYS EARLY 2 isoform X2
TrEMBLA0A0Q3J3F40.0A0A0Q3J3F4_BRADI; Uncharacterized protein
STRINGBRADI3G01340.40.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21430.20.0DNA binding