PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Brast04G331800.1.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

MYB_related

Protein Properties

Length: 1169aa MW: 130161 Da PI: 9.1068

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast04G331800.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	22.3	3e-07	45	80	3	40
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40 W+++E e+++ a +++G++ Wk++a + Rt ++ Brast04G331800.1.p 45 QWSKDELERFYGAYRKYGKD-WKKVAGAVH-DRTSDMV 80 6***************99.****999.9997665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.79E-9	37	89	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.4E-4	45	84	IPR009057	Homeodomain-like
Pfam	PF00249	1.3E-5	45	84	IPR001005	SANT/Myb domain
CDD	cd00167	0.00294	46	80	No hit	No description
Pfam	PF06584	1.7E-32	655	755	IPR033471	DIRP domain
SMART	SM01135	5.3E-57	655	756	IPR033471	DIRP domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005730	Cellular Component	nucleolus
GO:0016592	Cellular Component	mediator complex
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1169 aa Download sequence Send to blast
MSSTRKVRNV NKRYAKINED WQDKEATTVH KSKVRKKKLS DLGSQWSKDE LERFYGAYRK 60 YGKDWKKVAG AVHDRTSDMV EALYNMNRAY LSLPEGTATA AGLIAMMTDH YNILDGSNSD 120 HESNDSPKTS RKPQKRGRAK LQSVSKTSDT RYADLLQSQP SSSNYGCLSL LKKKRSGDLF 180 VGNRPRAVGK RTPRVPVASM YHRDDRIGPA NRQSKPDANN GDDEGAHVAA LALAEVGQRG 240 SSPQVSQTPG RSSDRLFLSP VKSIDRKNAD SDMGSSKLHG FQVDADYPEG SLGSREAETG 300 DYPKDASYFM NNGGSASGKS KQKIKKSQRR KKKAAQKSDD QLEDDREACS GTEEGHSARK 360 AKDESEVDTV GTSWPSNKSN KRSRQLFFDD ESSALDALYT LADLSVNILQ PSSIAESESS 420 AHIKDESRDN DFDDKPSVPA ALSLFEKKET SRKMKKVKRQ SEIASNEMVT RKKARLSKDP 480 HHDEGAISEV KQQDYNVKKE KKKRKSATGK IPKDEKKDEK NTLNDIEKTE VSAEEGKASS 540 NKGRHTRVSP VSKQNKSKAQ ESSPAHADSG KEAMDIVETT QNATTQQSDL TSKARSRRKL 600 GILKALAPEC KPAEGTDGSH DNVSYPVNNV IDLKDKLSHC LSSRFLRRWC MSEWFYSAID 660 YPWFAKSEFV EYLNHVKLGH VPRLTRVEWG VIRSSLGKPR RLSKQFLHEE REKLFKYRDS 720 VRQHYAELRS GVREGLPTDL ARPLAVGQRV IACHPKTREL HDGSVLTVDH HHCRVQFDRP 780 ELGVEFVMDI DCMPLHPLEN FPESLRRQNI VNKYYSSFSE VKFEDRSREY GGGGVARFAS 840 NGDTFDTHAK AAVNEVTGAA QEAMYSQPCT LSQIQEREAD IKALAELSRS LDKKEALLVE 900 LRHMNEEVSA KQKDGETISE LEHFRKQYAM VLVQLRDSND HVASALLSLR QRNTFHEHPA 960 QSYPKSTDNG GALNGKLEPF NHFGYINQES GSQVMEIIET SRCRAKTMVD VAIQAMCKVS 1020 EGENAFAKIG EALDNLSIRG TGSGSSILGI RRIPPDSGQA NSTCQDNSTS GRFDPATTNT 1080 SSPRMTNGYD SEAQFPSELI SSCVATVLMI QNCTEKQCHP AEVAHILDSA LSRLQPCSSQ 1140 NVPIFREIEM CMGIIKNQML ALIPTPSG*

Sequence ? help Back to Top

Protein Sequence Length: 1169 aa Download sequence Send to blast

MSSTRKVRNV NKRYAKINED WQDKEATTVH KSKVRKKKLS DLGSQWSKDE LERFYGAYRK  60
YGKDWKKVAG AVHDRTSDMV EALYNMNRAY LSLPEGTATA AGLIAMMTDH YNILDGSNSD  120
HESNDSPKTS RKPQKRGRAK LQSVSKTSDT RYADLLQSQP SSSNYGCLSL LKKKRSGDLF  180
VGNRPRAVGK RTPRVPVASM YHRDDRIGPA NRQSKPDANN GDDEGAHVAA LALAEVGQRG  240
SSPQVSQTPG RSSDRLFLSP VKSIDRKNAD SDMGSSKLHG FQVDADYPEG SLGSREAETG  300
DYPKDASYFM NNGGSASGKS KQKIKKSQRR KKKAAQKSDD QLEDDREACS GTEEGHSARK  360
AKDESEVDTV GTSWPSNKSN KRSRQLFFDD ESSALDALYT LADLSVNILQ PSSIAESESS  420
AHIKDESRDN DFDDKPSVPA ALSLFEKKET SRKMKKVKRQ SEIASNEMVT RKKARLSKDP  480
HHDEGAISEV KQQDYNVKKE KKKRKSATGK IPKDEKKDEK NTLNDIEKTE VSAEEGKASS  540
NKGRHTRVSP VSKQNKSKAQ ESSPAHADSG KEAMDIVETT QNATTQQSDL TSKARSRRKL  600
GILKALAPEC KPAEGTDGSH DNVSYPVNNV IDLKDKLSHC LSSRFLRRWC MSEWFYSAID  660
YPWFAKSEFV EYLNHVKLGH VPRLTRVEWG VIRSSLGKPR RLSKQFLHEE REKLFKYRDS  720
VRQHYAELRS GVREGLPTDL ARPLAVGQRV IACHPKTREL HDGSVLTVDH HHCRVQFDRP  780
ELGVEFVMDI DCMPLHPLEN FPESLRRQNI VNKYYSSFSE VKFEDRSREY GGGGVARFAS  840
NGDTFDTHAK AAVNEVTGAA QEAMYSQPCT LSQIQEREAD IKALAELSRS LDKKEALLVE  900
LRHMNEEVSA KQKDGETISE LEHFRKQYAM VLVQLRDSND HVASALLSLR QRNTFHEHPA  960
QSYPKSTDNG GALNGKLEPF NHFGYINQES GSQVMEIIET SRCRAKTMVD VAIQAMCKVS  1020
EGENAFAKIG EALDNLSIRG TGSGSSILGI RRIPPDSGQA NSTCQDNSTS GRFDPATTNT  1080
SSPRMTNGYD SEAQFPSELI SSCVATVLMI QNCTEKQCHP AEVAHILDSA LSRLQPCSSQ  1140
NVPIFREIEM CMGIIKNQML ALIPTPSG*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	320	331	KQKIKKSQRRKK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast04G331800.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010233693.1	0.0	protein ALWAYS EARLY 2 isoform X1
Refseq	XP_010233694.1	0.0	protein ALWAYS EARLY 2 isoform X1
TrEMBL	I1HWA9	0.0	I1HWA9_BRADI; Uncharacterized protein
STRING	BRADI3G01340.4	0.0	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6230	23	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21430.2	0.0	DNA binding

Link Out ? help Back to Top
Phytozome	Brast04G331800.1.p