PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast04G330100.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C2H2
Protein Properties Length: 867aa    MW: 96796.9 Da    PI: 7.0743
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast04G330100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.61.1e-05559580223
                         EETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                         +C+ Cg sF  + +Lk+H+++H
  Brast04G330100.1.p 559 TCEECGASFQKPAHLKQHMQSH 580
                         6*******************99 PP
2zf-C2H220.31.5e-06586610123
                         EEET..TTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                         + Cp  dC+ s+ rk++L+rH+ +H
  Brast04G330100.1.p 586 FACPleDCPFSYIRKDHLNRHMLKH 610
                         78*********************99 PP
3zf-C2H214.30.00012615640123
                         EEET..TTTEEESSHHHHHHHHHH.T CS
             zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                         + Cp   C+k+Fs k n +rH +  H
  Brast04G330100.1.p 615 FACPmeGCDKRFSIKANVQRHVKEmH 640
                         78********************9988 PP
4zf-C2H213.80.00017654676323
                         ET..TTTEEESSHHHHHHHHHHT CS
             zf-C2H2   3 Cp..dCgksFsrksnLkrHirtH 23 
                         C+   C+k F+  s Lk+H  +H
  Brast04G330100.1.p 654 CKeeGCNKAFKYASKLKKHEESH 676
                         88889**************9988 PP
5zf-C2H218.36.2e-06743767223
                         EET..TTTEEESSHHHHHHHHHH.T CS
             zf-C2H2   2 kCp..dCgksFsrksnLkrHirt.H 23 
                         kC+  dC  sFs+ksnL++H++  H
  Brast04G330100.1.p 743 KCTfeDCESSFSNKSNLTKHMKAcH 767
                         79999*****************955 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.25.40.101.6E-732113IPR011990Tetratricopeptide-like helical domain
PROSITE profilePS513755.8643565IPR002885Pentatricopeptide repeat
PROSITE profilePS513757.76166101IPR002885Pentatricopeptide repeat
PfamPF015350.196897IPR002885Pentatricopeptide repeat
PROSITE profilePS513758.309137167IPR002885Pentatricopeptide repeat
PfamPF015354.5E-4142164IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007569.8E-4142164IPR002885Pentatricopeptide repeat
PROSITE profilePS513758.583168198IPR002885Pentatricopeptide repeat
PfamPF015350.01170198IPR002885Pentatricopeptide repeat
PROSITE profilePS5137510.315199233IPR002885Pentatricopeptide repeat
PfamPF015352.6E-5201230IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007562.2E-5201234IPR002885Pentatricopeptide repeat
PROSITE profilePS513757.859269299IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.25.40.101.6E-7272331IPR011990Tetratricopeptide-like helical domain
PfamPF015350.0059274295IPR002885Pentatricopeptide repeat
PfamPF130412.7E-11299347IPR002885Pentatricopeptide repeat
PROSITE profilePS5137512.244300334IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007568.5E-9302336IPR002885Pentatricopeptide repeat
PROSITE profilePS513758.32335365IPR002885Pentatricopeptide repeat
PROSITE profilePS513756.369371401IPR002885Pentatricopeptide repeat
PfamPF015350.06374398IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.25.40.101.6E-7401465IPR011990Tetratricopeptide-like helical domain
PROSITE profilePS513755.426403433IPR002885Pentatricopeptide repeat
PROSITE profilePS513757.136437471IPR002885Pentatricopeptide repeat
SMARTSM0035533512534IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.757558585IPR007087Zinc finger, C2H2
SMARTSM003550.0088558580IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.604.2E-4559576IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280560580IPR007087Zinc finger, C2H2
SuperFamilySSF576672.24E-10570612No hitNo description
Gene3DG3DSA:3.30.160.603.4E-11577612IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.016586615IPR007087Zinc finger, C2H2
SMARTSM003558.2E-4586610IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280588610IPR007087Zinc finger, C2H2
SuperFamilySSF576672.21E-7596644No hitNo description
Gene3DG3DSA:3.30.160.608.3E-6613639IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0012615640IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.637615645IPR007087Zinc finger, C2H2
PROSITE patternPS000280617640IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.2E-6650676IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.026652676IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.471652676IPR007087Zinc finger, C2H2
PROSITE patternPS000280654676IPR007087Zinc finger, C2H2
SMARTSM003557.4684709IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280686709IPR007087Zinc finger, C2H2
SMARTSM0035515712733IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.1E-6723764IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.0E-8724784No hitNo description
PROSITE profilePS5015711.884742772IPR007087Zinc finger, C2H2
SMARTSM003550.0015742767IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280744767IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.609.7E-5767795IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003555.4773799IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.891773799IPR007087Zinc finger, C2H2
PROSITE patternPS000280775799IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008097Molecular Function5S rRNA binding
GO:0046872Molecular Functionmetal ion binding
GO:0080084Molecular Function5S rDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 867 aa     Download sequence    Send to blast
MNRSICHHLL AHGKSIRELE QIHAAALVHG LHPGNQSVSC KMFRSYADLG RAADARRLFG  60
EIPKPDLVSL TSLMSLHLQL NQHREAMSLF SRVVASGGHR PDGFAVVGAL SASGGVGDLR  120
AGEALHGMIC RCGLGSEPVV GNALVDMYSR CGRFEGAVGV FDEMALKDEI TWGSMLHGYI  180
KCVGVDSALS FFDQMPMKSV VSWTALITGH VQAKNPIRAL ELFGRMVLEG HRPTHFTIVG  240
VLSACADIGA LDLGRVIHGY GSKFNVSTNI IVSNALMDMY AKSGSIEMAF AVFEEVPLKD  300
AFTWTTMISS FTVQGDGSKA LELFGDMLRS GIVPNSVTFV SVLSACSHAG LIQNGKELFD  360
KMRGTYNISP QLEHYGCMVD LLGRGGLLEE AEALIYDMDL EPDVVIWRSL LSACLVHGND  420
RLAEIAGKEI IKREPGDDGV YVLLWNIYAS SDKWKEALDM RKQMLTRRVY KKPGCSWIEV  480
DGGVHEFLMS SGDEIDGDEM VEETHGRDIR RYKCEFCTVI RSKKCLIRAH MVAHHKDELD  540
MSEIYNSNGE KIIQEGEPTC EECGASFQKP AHLKQHMQSH SKERSFACPL EDCPFSYIRK  600
DHLNRHMLKH EGKLFACPME GCDKRFSIKA NVQRHVKEMH EVENGCKSNQ QFLCKEEGCN  660
KAFKYASKLK KHEESHVKLD YVEVVCCEEG CMKTFTNVEC LRAHNQSCHQ YVQCDICGEK  720
HLKKNIKRHL RAHDTMVPTE RIKCTFEDCE SSFSNKSNLT KHMKACHDQI RPFACRFEGC  780
GKEFTYKHVR DNHEKSSAHV YVEGDFAEMA EQLRSCPRGG RKRAAVTVET LTRKRVSMPG  840
EAVSLEDGTE YMRWLLSGGD VSSHAE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5iww_D5e-58204144331PLS9-PPR
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00229DAPTransfer from AT1G72050Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast04G330100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024317701.10.0pentatricopeptide repeat-containing protein At2g22410, mitochondrial-like
TrEMBLA0A453MVM80.0A0A453MVM8_AEGTS; Uncharacterized protein
STRINGBRADI3G01487.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23823882
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.21e-114transcription factor IIIA