PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast04G329700.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | bHLH | ||||||||
Protein Properties | Length: 247aa MW: 26292.7 Da PI: 5.2076 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 29.6 | 1.3e-09 | 66 | 127 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCC.C.............TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPk.as..........kapskKlsKaeiLekAveYIksL 54 ++ rE+ RR+++N++f eL +++ + + + ++ Kl+Ka iL A + + +L Brast04G329700.1.p 66 SKACREKMRREKLNDRFLELCSVMNPgNQgclevcsasnSSKQAKLDKANILSDAARMLAQL 127 6789**********************777***************************999988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 2.49E-11 | 55 | 143 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 11.528 | 62 | 127 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 9.87E-6 | 65 | 132 | No hit | No description |
Pfam | PF00010 | 4.0E-7 | 66 | 127 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 7.1E-11 | 67 | 149 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 5.9E-6 | 68 | 133 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence Send to blast |
MMDGGGDPVE EFLVGGGAGG GDGEDLAVFC DGGLGIEDVS GDACGLEQSN SGKRGRDEPS 60 SSGPKSKACR EKMRREKLND RFLELCSVMN PGNQGCLEVC SASNSSKQAK LDKANILSDA 120 ARMLAQLRGE AEKLKQSNET LRETIKDLKV EKNELRDEKA SLKAEKDRLE QQVKATSVAP 180 TGFVPHLPHP AAFHPAAFPP FAPPYQAPTD KGAPIPAAFP GMAMWHWLPP TAVDTTQDPK 240 LWPPNA* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast04G329700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003573308.1 | 1e-152 | transcription factor ILR3 | ||||
TrEMBL | I1HWD4 | 1e-151 | I1HWD4_BRADI; Uncharacterized protein | ||||
STRING | BRADI3G01540.1 | 1e-152 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8173 | 36 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G54680.1 | 1e-51 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Brast04G329700.1.p |