PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Brast04G326100.1.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

bHLH

Protein Properties

Length: 565aa MW: 60128.9 Da PI: 4.4732

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast04G326100.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	39.2	1.2e-12	290	333	7	55
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +ErrRR+++N+++ +Lr+l+P+ +K++ a+iL A++YI Lq Brast04G326100.1.p 290 VAERRRRKKLNDRLYKLRSLVPNI-----TKMDRAAILGDAIDYIVGLQ 333 58*******************7.....7*************9887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	7.72E-18	281	345	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.663	283	332	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.57E-13	283	337	No hit	No description
SMART	SM00353	6.4E-16	289	338	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.7E-10	290	333	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	6.5E-17	290	345	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009555	Biological Process	pollen development
GO:0048658	Biological Process	anther wall tapetum development
GO:0005634	Cellular Component	nucleus
GO:0000978	Molecular Function	RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 565 aa Download sequence Send to blast
MGVGEHQQQH HSIVSSSAAA AAALHGHGGG GGGGGGTTVE TALRPLVGAD GWDYCIYWRL 60 SPDQRFLEMT GFCCSGEFEA QVAALGDLPS SIPLDSSIGM HAQALLSNQP IWQSFSGEVA 120 QTHDTAGGNV AGEKTRLLVP VAGGLVELFA SRYMAEEQEM AELVMAQCGG GHGWQLQQPA 180 AMAVAEEQFY AATSVASLNL FDGEDQFLPP AAGAGEDGGA AAWGFPAGSS EPSAAAAHEQ 240 LFSGRVAARA DSGSEGSELQ GDDDVDGEVQ RDGKDDGTGG GKRQQCKNLV AERRRRKKLN 300 DRLYKLRSLV PNITKMDRAA ILGDAIDYIV GLQKQVKELQ DELEEEDNPN PNKGIMAPDV 360 LTIDDHPPPG LDNDDVSPPP PPPLCKKRAR AAAVAGEGQE DKDNDKGGDQ EQDMEPQVEV 420 RQVDGGDEFY LQVLCSHKSG RFVRIMDEIA ALGLQVTNVN VTSYNKLVLN VFRAVMKDNE 480 VAVPADRVRD SLLEVTREMY GAGGVWPAVS MALPPLATME APMIMTTAEA AKLDAGEAGE 540 HHYQQQHQVL GGYHQHHLHY LGLD*

Sequence ? help Back to Top

Protein Sequence Length: 565 aa Download sequence Send to blast

MGVGEHQQQH HSIVSSSAAA AAALHGHGGG GGGGGGTTVE TALRPLVGAD GWDYCIYWRL  60
SPDQRFLEMT GFCCSGEFEA QVAALGDLPS SIPLDSSIGM HAQALLSNQP IWQSFSGEVA  120
QTHDTAGGNV AGEKTRLLVP VAGGLVELFA SRYMAEEQEM AELVMAQCGG GHGWQLQQPA  180
AMAVAEEQFY AATSVASLNL FDGEDQFLPP AAGAGEDGGA AAWGFPAGSS EPSAAAAHEQ  240
LFSGRVAARA DSGSEGSELQ GDDDVDGEVQ RDGKDDGTGG GKRQQCKNLV AERRRRKKLN  300
DRLYKLRSLV PNITKMDRAA ILGDAIDYIV GLQKQVKELQ DELEEEDNPN PNKGIMAPDV  360
LTIDDHPPPG LDNDDVSPPP PPPLCKKRAR AAAVAGEGQE DKDNDKGGDQ EQDMEPQVEV  420
RQVDGGDEFY LQVLCSHKSG RFVRIMDEIA ALGLQVTNVN VTSYNKLVLN VFRAVMKDNE  480
VAVPADRVRD SLLEVTREMY GAGGVWPAVS MALPPLATME APMIMTTAEA AKLDAGEAGE  540
HHYQQQHQVL GGYHQHHLHY LGLD*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	291	298	ERRRRKKL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in the regulation of tapetum programmed cell death (PCD) and degradation during male reproductive development. Promotes tapetal PCD. Positively regulates the expression of two tapetum-specific genes, the cysteine protease CP1 and the lipid-transfer protein C6 (PubMed:17138695). Acts upstream from and interacts with EAT1/DTD in the regulation of tapetal PCD (PubMed:23385589). Regulates the expression of genes related to aliphatic metabolism during pollen development. May play regulatory role in the lipidic metabolism involved in the formation of pollen wall (PubMed:19825565). {ECO:0000269\|PubMed:17138695, ECO:0000269\|PubMed:19825565, ECO:0000269\|PubMed:23385589}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast04G326100.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK375074	1e-102	AK375074.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3084O15.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010233727.1	0.0	transcription factor TDR
Refseq	XP_010233729.1	0.0	transcription factor TDR
Refseq	XP_024317908.1	0.0	transcription factor TDR
Swissprot	Q6YUS3	1e-165	TDR_ORYSJ; Transcription factor TDR
TrEMBL	I1HWI2	0.0	I1HWI2_BRADI; Uncharacterized protein
STRING	BRADI3G01901.1	0.0	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5530	34	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16910.1	3e-39	bHLH family protein

Link Out ? help Back to Top
Phytozome	Brast04G326100.1.p

Publications ? help Back to Top
Endo M, et al. High temperatures cause male sterility in rice plants with transcriptional alterations during pollen development. Plant Cell Physiol., 2009. 50(11): p. 1911-22 [PMID:19808807] Xu J,Wu M,He C [Identification and functional analysis of Tdrxoo, the member of TonB-dependent-receptor family proteins in Xanthomonas oryzae pv. oryzae]. Wei Sheng Wu Xue Bao, 2010. 50(2): p. 155-61 [PMID:20387456] Liu Z,Bao W,Liang W,Yin J,Zhang D Identification of gamyb-4 and analysis of the regulatory role of GAMYB in rice anther development. J Integr Plant Biol, 2010. 52(7): p. 670-8 [PMID:20590996] Zhang D, et al. OsC6, encoding a lipid transfer protein, is required for postmeiotic anther development in rice. Plant Physiol., 2010. 154(1): p. 149-62 [PMID:20610705] Senapati PK,Behera S Experimental investigation on an entrained flow type biomass gasification system using coconut coir dust as powdery biomass feedstock. Bioresour. Technol., 2012. 117: p. 99-106 [PMID:22613886] Zhang SR,Dong DM,Zheng WG,Zhao XD,Wang JH [Laser-induced fluorescence spectroscopy characterization of farmland soil moisture content]. Guang Pu Xue Yu Guang Pu Fen Xi, 2012. 32(10): p. 2623-7 [PMID:23285852] Li L, et al. An anther development F-box (ADF) protein regulated by tapetum degeneration retardation (TDR) controls rice anther development. Planta, 2015. 241(1): p. 157-66 [PMID:25236969] Yi J, et al. Defective Tapetum Cell Death 1 (DTC1) Regulates ROS Levels by Binding to Metallothionein during Tapetum Degeneration. Plant Physiol., 2016. 170(3): p. 1611-23 [PMID:26697896]