PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Brast04G326000.1.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

bHLH

Protein Properties

Length: 516aa MW: 55065.8 Da PI: 4.4153

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast04G326000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	40.7	4.4e-13	257	300	7	55
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++ErrRR+++N+++ +Lr+l+P+ +K++ a+iL A++YI Lq Brast04G326000.1.p 257 IAERRRRKKLNDRLYKLRSLVPNI-----TKMDRASILGDAIDYIVGLQ 300 79*******************7.....7*************9887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	1.84E-14	248	304	No hit	No description
SuperFamily	SSF47459	4.84E-18	248	312	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	16.018	250	299	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.5E-16	256	305	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.4E-17	257	313	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.2E-10	257	300	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048657	Biological Process	anther wall tapetum cell differentiation
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 516 aa Download sequence Send to blast
MGGGGEHHSI AVSSAAVHGH GGGGGGTVEA VLRPLVGADG WEYSIYWRLS PDQRFLEMAG 60 FCCSGELEAL GDLPSSIPLD SSSIGMHAQA LLSNQPLWQS FPGVHGHGDG GGQKTRLLVP 120 VAGGLVELFA SRYMAEEQEM AELVMAQCGG GHGWQLQQPA EEQFYAATSL NLFDNGEGED 180 QFLAPAAGAG EDDGGWGFEA GSSEPAHEQQ LYSGGAAAAR GAESGSDGSE LQGDDDEVQR 240 GSGKDGGGKR QQCKNLIAER RRRKKLNDRL YKLRSLVPNI TKMDRASILG DAIDYIVGLQ 300 RQVKDLQDEL EEEEDDPNYP NNGNPDVLTI DDHPPPPPGL DNDDASPPPP PLCRKRARAA 360 EEDEEDKGGE QEQDMEPQVE VRQAGGGGGG GEFFLQVLCS HKPGRFVRIM DEIAALGLQV 420 TSVSVTSYNK LVLNVFRAVM RDNEAAAVPA DRVRDSLLEV TREMYGGAWP AVETPAMMEA 480 KLDGQGQVAA GEHRYQQVLG GGGFHQHHLH YLGLD*

Sequence ? help Back to Top

Protein Sequence Length: 516 aa Download sequence Send to blast

MGGGGEHHSI AVSSAAVHGH GGGGGGTVEA VLRPLVGADG WEYSIYWRLS PDQRFLEMAG  60
FCCSGELEAL GDLPSSIPLD SSSIGMHAQA LLSNQPLWQS FPGVHGHGDG GGQKTRLLVP  120
VAGGLVELFA SRYMAEEQEM AELVMAQCGG GHGWQLQQPA EEQFYAATSL NLFDNGEGED  180
QFLAPAAGAG EDDGGWGFEA GSSEPAHEQQ LYSGGAAAAR GAESGSDGSE LQGDDDEVQR  240
GSGKDGGGKR QQCKNLIAER RRRKKLNDRL YKLRSLVPNI TKMDRASILG DAIDYIVGLQ  300
RQVKDLQDEL EEEEDDPNYP NNGNPDVLTI DDHPPPPPGL DNDDASPPPP PLCRKRARAA  360
EEDEEDKGGE QEQDMEPQVE VRQAGGGGGG GEFFLQVLCS HKPGRFVRIM DEIAALGLQV  420
TSVSVTSYNK LVLNVFRAVM RDNEAAAVPA DRVRDSLLEV TREMYGGAWP AVETPAMMEA  480
KLDGQGQVAA GEHRYQQVLG GGGFHQHHLH YLGLD*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	258	265	ERRRRKKL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in the regulation of tapetum programmed cell death (PCD) and degradation during male reproductive development. Promotes tapetal PCD. Positively regulates the expression of two tapetum-specific genes, the cysteine protease CP1 and the lipid-transfer protein C6 (PubMed:17138695). Acts upstream from and interacts with EAT1/DTD in the regulation of tapetal PCD (PubMed:23385589). Regulates the expression of genes related to aliphatic metabolism during pollen development. May play regulatory role in the lipidic metabolism involved in the formation of pollen wall (PubMed:19825565). {ECO:0000269\|PubMed:17138695, ECO:0000269\|PubMed:19825565, ECO:0000269\|PubMed:23385589}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast04G326000.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK375074	2e-82	AK375074.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3084O15.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010233727.1	0.0	transcription factor TDR
Refseq	XP_010233729.1	0.0	transcription factor TDR
Refseq	XP_024317908.1	0.0	transcription factor TDR
Swissprot	Q6YUS3	1e-158	TDR_ORYSJ; Transcription factor TDR
TrEMBL	I1HWI2	0.0	I1HWI2_BRADI; Uncharacterized protein
STRING	BRADI3G01901.1	0.0	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5530	34	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16910.1	2e-38	bHLH family protein

Link Out ? help Back to Top
Phytozome	Brast04G326000.1.p

Publications ? help Back to Top
Endo M, et al. High temperatures cause male sterility in rice plants with transcriptional alterations during pollen development. Plant Cell Physiol., 2009. 50(11): p. 1911-22 [PMID:19808807] Xu J,Wu M,He C [Identification and functional analysis of Tdrxoo, the member of TonB-dependent-receptor family proteins in Xanthomonas oryzae pv. oryzae]. Wei Sheng Wu Xue Bao, 2010. 50(2): p. 155-61 [PMID:20387456] Liu Z,Bao W,Liang W,Yin J,Zhang D Identification of gamyb-4 and analysis of the regulatory role of GAMYB in rice anther development. J Integr Plant Biol, 2010. 52(7): p. 670-8 [PMID:20590996] Zhang D, et al. OsC6, encoding a lipid transfer protein, is required for postmeiotic anther development in rice. Plant Physiol., 2010. 154(1): p. 149-62 [PMID:20610705] Senapati PK,Behera S Experimental investigation on an entrained flow type biomass gasification system using coconut coir dust as powdery biomass feedstock. Bioresour. Technol., 2012. 117: p. 99-106 [PMID:22613886] Zhang SR,Dong DM,Zheng WG,Zhao XD,Wang JH [Laser-induced fluorescence spectroscopy characterization of farmland soil moisture content]. Guang Pu Xue Yu Guang Pu Fen Xi, 2012. 32(10): p. 2623-7 [PMID:23285852] Li L, et al. An anther development F-box (ADF) protein regulated by tapetum degeneration retardation (TDR) controls rice anther development. Planta, 2015. 241(1): p. 157-66 [PMID:25236969] Yi J, et al. Defective Tapetum Cell Death 1 (DTC1) Regulates ROS Levels by Binding to Metallothionein during Tapetum Degeneration. Plant Physiol., 2016. 170(3): p. 1611-23 [PMID:26697896]