PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast04G324800.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family FAR1
Protein Properties Length: 791aa    MW: 91181.6 Da    PI: 8.6263
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast04G324800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR149.41.5e-1539116290
                FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                         fYn YA   GF +r+ ks+ + + g   +r+f+C +  k+              + tr+gCka+++v++++ +++w++t+++++HnH+l 
  Brast04G324800.1.p  39 FYNLYAMFHGFGIRRGKSRLK-KGGMKSMREFCCVRRNKKVVG-----------SATRIGCKAMIRVNRSStTQEWRLTRFVSDHNHPLK 116
                         9***************98886.88889********98766554...........457*************99****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.5E-1139116IPR004330FAR1 DNA binding domain
PROSITE profilePS508118.78848116IPR003657WRKY domain
PfamPF105513.2E-30238331IPR018289MULE transposase domain
PROSITE profilePS509669.359522558IPR007527Zinc finger, SWIM-type
PROSITE profilePS501588.68768781IPR001878Zinc finger, CCHC-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 791 aa     Download sequence    Send to blast
EVVDEEVVDV PIPPSYYELE ILEPKVGQVF KDETDAYAFY NLYAMFHGFG IRRGKSRLKK  60
GGMKSMREFC CVRRNKKVVG SATRIGCKAM IRVNRSSTTQ EWRLTRFVSD HNHPLKKNIS  120
VTKQYRSHNS IDEGTKCIVQ SMVDKGISPT SMYGLVAGMH GGASLAPFTR RAMNRLTYAI  180
RRDECSDDVR KTFDYLRELQ CRSKNFFYTV QIDGASRIKN XFWSHALSRL SFEHLGDVVT  240
FDTTFQTNMY NMPFGIFVGV NNHFQTVLFG CALLREETLE SFKWLFQTFT EAMHGKKPAS  300
ILTDNYHQME VAISEVWPDT VHRVCKWHXL KKAKENLGNI YSKRSKFKEE FHKVLNDPQT  360
VDEFEKAWID LVIEYELESS TYLKRMWDMR SKWAPMYFKR YFFAKMSTTQ RSESMNHVLK  420
KYVRPSSSLN GFVRRYECFY FDRIAEEDAE EFHSSDEKVI TATQSPIEKH AARVYTRGAF  480
ERFKEQFVLS LMYEVQSSGD ENKRKVIHIG ETSRPNWARK MYEVVAIVTE KEFSCPCMLF  540
EHFGILCCHI LRVLVQLGFC EIPEKYVLKR WTKVARDTIP EHLEKYREDN EAAASRTYXR  600
ALMQKTVLDV GNLGDTNTET YKETMEVLSK LVEKLKLMVG TTDKSTDQNR ECDQQANKVG  660
PNGAIVAVHE FEDMGIXSDN TLDDSDDAEL SSDEAMEDEL EREVPIPDIL PPEVRRGRGR  720
PRSRRMMSKG EVASLASKSK AGGTSQQNTR NVANXSLSGS RPMQIRYCSK CGQQGHNKST  780
CGGDSTYKRK *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1718726GRPRSRRMM
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast04G324800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025880431.10.0protein FAR1-RELATED SEQUENCE 5
RefseqXP_025881544.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLQ67IU60.0Q67IU6_ORYSJ; Far-red impaired response protein-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-111FAR1-related sequence 5