PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast04G315700.4.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bZIP
Protein Properties Length: 320aa    MW: 34096.4 Da    PI: 5.6441
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast04G315700.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_163.92.8e-20224286163
                         XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                         e+elk+++rk +NRe+ArrsR+RK+ae+eeL +++++L+ eN++L+ ele+ kke+++l+ ++
  Brast04G315700.4.p 224 ERELKKQKRKLSNRESARRSRLRKQAECEELGQRAEVLKLENSSLRAELERVKKEYEELRLKN 286
                         89*********************************************************9887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077771.3E-25196IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165961.2E-6124173No hitNo description
PfamPF165961.2E-7173206No hitNo description
Gene3DG3DSA:1.20.5.1702.4E-14222283No hitNo description
PfamPF001705.6E-19224286IPR004827Basic-leucine zipper domain
SMARTSM003381.1E-18224288IPR004827Basic-leucine zipper domain
PROSITE profilePS5021712.875226289IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.0E-10227283No hitNo description
CDDcd147028.45E-25229279No hitNo description
PROSITE patternPS000360231246IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MGSNDPSTPS KASKVPEQEQ PPATTSGTTA PVYPEWPGFQ GYPAMPPHGF FPPPVAAGQA  60
HPYMWGTQHM VPPYGTPPPP YMMYPPGTVY AHPSTPGVHP FHYPVPTNGN LDPAGAAPGA  120
SEMNGKNEPG KTSGPSANGI TSNSESGSDS ESEGSDANSQ NDSHSKENDV NENVQSGAVI  180
GGVAGPATNL NIGMDYWGAT GSSPLPAMRG KVPSGSVRGE QWDERELKKQ KRKLSNRESA  240
RRSRLRKQAE CEELGQRAEV LKLENSSLRA ELERVKKEYE ELRLKNASLK EKLGEAGDSV  300
PDMNEQSDTN GGSHQQKEP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1226233LKKQKRKL
2240246RRSRLRK
3240247RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtBinds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast04G315700.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3618580.0AK361858.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1150N02.
GenBankAK3648410.0AK364841.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2028M07.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024316435.10.0uncharacterized protein LOC100826051
SwissprotP239221e-167HBP1A_WHEAT; Transcription factor HBP-1a
TrEMBLI1HWT30.0I1HWT3_BRADI; Uncharacterized protein
STRINGBRADI3G02730.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32150.12e-47basic region/leucine zipper transcription factor 68
Publications ? help Back to Top
  1. Tabata T,Nakayama T,Mikami K,Iwabuchi M
    HBP-1a and HBP-1b: leucine zipper-type transcription factors of wheat.
    EMBO J., 1991. 10(6): p. 1459-67
    [PMID:2026143]
  2. Tabata T, et al.
    A protein that binds to a cis-acting element of wheat histone genes has a leucine zipper motif.
    Science, 1989. 245(4921): p. 965-7
    [PMID:2772648]
  3. Mikami K, et al.
    Developmental and tissue-specific regulation of the gene for the wheat basic/leucine zipper protein HBP-1a(17) in transgenic Arabidopsis plants.
    Mol. Gen. Genet., 1995. 248(5): p. 573-82
    [PMID:7476857]
  4. Nakayama T,Okanami M,Meshi T,Iwabuchi M
    Dissection of the wheat transcription factor HBP-1a(17) reveals a modular structure for the activation domain.
    Mol. Gen. Genet., 1997. 253(5): p. 553-61
    [PMID:9065688]
  5. Okanami M,Meshi T,Tamai H,Iwabuchi M
    HALF-1, a bZIP-type protein, interacting with the wheat transcription factor HBP-1a contains a novel transcriptional activation domain.
    Genes Cells, 1996. 1(1): p. 87-99
    [PMID:9078369]