PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast04G309800.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family Nin-like
Protein Properties Length: 827aa    MW: 87577.8 Da    PI: 6.9674
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast04G309800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK83.81.6e-26594642452
              RWP-RK   4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                          + l++l+ yFs+++kdAA++Lgvc+T++KriCRq+GI+RWP+Rki+++
  Brast04G309800.1.p 594 PVGLKELQGYFSGSLKDAARSLGVCPTTMKRICRQHGISRWPFRKISKV 642
                         67899*****************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151917.223575662IPR003035RWP-RK domain
PfamPF020423.0E-24595642IPR003035RWP-RK domain
SuperFamilySSF542774.91E-19716788No hitNo description
PROSITE profilePS5174518.843719814IPR000270PB1 domain
SMARTSM006669.9E-16719812IPR000270PB1 domain
CDDcd064072.64E-34720813No hitNo description
Gene3DG3DSA:3.10.20.2405.9E-22720786No hitNo description
PfamPF005642.2E-12720787IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 827 aa     Download sequence    Send to blast
MEGAAAIDVD SHPHPTPRRN LGGEGFGWEA AARHRSQSLA RAPVAPHARA RAPPPALSLV  60
VLNFFCSTPV AAQVFVDLRR RRRGGFGLGS MVMGVDADVE QVLSLRLGDG DRDSGGDEEA  120
AGGAVKERIA RALRLYKESS SPSGAGGEES PLLLQVWAPV AAGGRRVLAT RGQPFLVLAA  180
ASSSSSAPAP ARCSRRRLLQ YRAVSLAHVF SVDGGGCECA SWEERGLPGR AFDAGAAEWT  240
PNVQLYGAGE YARVSHALVH DVQGSLALPV LDPAAGRRCL AVVEMVTTAP MACFAAEAHK  300
LCKALQAVAL RGSEICYSQP AKISNPEATH AAMSEVSHLL ATVAGAHQLP LAQAWIRCKR  360
CSSSTDAIDQ HISLTTAGAP FHLAAGAAGF RDACVEHHLQ PGQGAVGEAA ASGSPRFCAD  420
VARRSKAAYP LAHYARLHGL AGCLAVPLRL RQFPMDDKAG QEEEECVVLE FFLQPDCRGA  480
DEQKAAVEAL VNTFREECSG DRLKAMAMSG LQDWSLEAVL ALGVHTTTIA DATHELNDRG  540
DFGRSDSDDE DEHLAADVAG GDQAVNIHGA DQNEAEDGVS RPEKKKTGRK AGKPVGLKEL  600
QGYFSGSLKD AARSLGVCPT TMKRICRQHG ISRWPFRKIS KVNRALSKIR RAATESEDCS  660
PRPVAASSTH PAPDPQKLCV SSALGDTSSQ GSSQEPPPLT RTALPKSLLR HSNGADREVV  720
TIKASYRGDI IRFRVPCSDG ITAVKEEVAK RLGLDASSFD VKYLDDDHEW VLLSCDADFQ  780
ECLDVAPVLP PSVSAAAHGA RPVSPVVRLM VQEVADNLGR FCGSSD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast04G309800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014755490.10.0protein NLP3
TrEMBLA0A0Q3PUU30.0A0A0Q3PUU3_BRADI; Uncharacterized protein
STRINGBRADI3G03170.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62692939
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64530.11e-125Nin-like family protein