PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Brast04G305800.2.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

G2-like

Protein Properties

Length: 449aa MW: 49230.2 Da PI: 6.8393

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast04G305800.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	105.4	3.2e-33	255	309	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r+rWt eLHerFvea+++LGG+ekAtPk +l+lmkvkgLt++hvkSHLQkYRl Brast04G305800.2.p 255 KTRMRWTVELHERFVEALKKLGGPEKATPKGVLKLMKVKGLTIYHVKSHLQKYRL 309 68****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	13.256	252	312	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.2E-30	254	310	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.31E-17	254	309	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.5E-25	255	310	IPR006447	Myb domain, plants
Pfam	PF00249	2.4E-9	257	308	IPR001005	SANT/Myb domain
Pfam	PF14379	1.1E-20	345	389	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 449 aa Download sequence Send to blast
MAHPCSATQP PVHRMFSVIS DDRASTSGAG SSCTTQFSTI KTELIRSSSM TEILPFELQK 60 CSTTDFNTGR SFSHVSRADL SDPILLSSST FCTSLNSSSS TNSKCRETGA LPFLPHPPKL 120 EQQNSSAGQS SSSSLLLAAD PSNIGHGDAG HSDDLKDFLN LAGYASGGEF HGGISNNMDF 180 NEQMEFQFLS EQLGIAITDN EEIPRLDDIY GRPQQPLALP VSSSSEQEDP RSAGSPAKVQ 240 LSSSTSSSGA AGCNKTRMRW TVELHERFVE ALKKLGGPEK ATPKGVLKLM KVKGLTIYHV 300 KSHLQKYRLA KYIPEKKEEN KPSSEDKKPQ SAADGIDPAK KKSLQMAEAL RMQIEVQKQL 360 HEQLEVQREL QLRIEEHAKY LQQILEQQKA RKCPSSMKSS MEGESSGSKP KEITEMRAET 420 PSAPSSKRKF PDIDIEHNQQ MDNERAEL*

Sequence ? help Back to Top

Protein Sequence Length: 449 aa Download sequence Send to blast

MAHPCSATQP PVHRMFSVIS DDRASTSGAG SSCTTQFSTI KTELIRSSSM TEILPFELQK  60
CSTTDFNTGR SFSHVSRADL SDPILLSSST FCTSLNSSSS TNSKCRETGA LPFLPHPPKL  120
EQQNSSAGQS SSSSLLLAAD PSNIGHGDAG HSDDLKDFLN LAGYASGGEF HGGISNNMDF  180
NEQMEFQFLS EQLGIAITDN EEIPRLDDIY GRPQQPLALP VSSSSEQEDP RSAGSPAKVQ  240
LSSSTSSSGA AGCNKTRMRW TVELHERFVE ALKKLGGPEK ATPKGVLKLM KVKGLTIYHV  300
KSHLQKYRLA KYIPEKKEEN KPSSEDKKPQ SAADGIDPAK KKSLQMAEAL RMQIEVQKQL  360
HEQLEVQREL QLRIEEHAKY LQQILEQQKA RKCPSSMKSS MEGESSGSKP KEITEMRAET  420
PSAPSSKRKF PDIDIEHNQQ MDNERAEL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	8e-25	255	312	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	8e-25	255	312	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	9e-25	255	312	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	9e-25	255	312	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	9e-25	255	312	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	9e-25	255	312	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	8e-25	255	312	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	8e-25	255	312	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	8e-25	255	312	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	8e-25	255	312	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	8e-25	255	312	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	8e-25	255	312	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in phosphate starvation signaling (PubMed:26082401). Binds to P1BS, an imperfect palindromic sequence 5'-GNATATNC-3', to promote the expression of inorganic phosphate (Pi) starvation-responsive genes (PubMed:26082401). Functionally redundant with PHR1 and PHR2 in regulating Pi starvation response and Pi homeostasis (PubMed:26082401). {ECO:0000269\|PubMed:26082401}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast04G305800.2.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated under Pi starvation conditions. {ECO:0000269\|PubMed:26082401}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003570911.1	0.0	protein PHOSPHATE STARVATION RESPONSE 3 isoform X1
Swissprot	Q6YXZ4	1e-170	PHR3_ORYSJ; Protein PHOSPHATE STARVATION RESPONSE 3
TrEMBL	A0A0Q3F128	0.0	A0A0Q3F128_BRADI; Uncharacterized protein
STRING	BRADI3G03538.2	0.0	(Brachypodium distachyon)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13040.2	2e-63	G2-like family protein

Link Out ? help Back to Top
Phytozome	Brast04G305800.2.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]