PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast04G295700.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | Whirly | ||||||||
Protein Properties | Length: 232aa MW: 25493.9 Da PI: 10.123 | ||||||||
Description | Whirly family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Whirly | 187 | 3.1e-58 | 54 | 191 | 2 | 139 |
Whirly 2 vyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrk 92 v+k+kaal++ +++p+f++++sg ++kr+G+++l++ +a+++r+yd+ kkq fals+tev++l++l+s esceffhdp++k+s+eG+v+k Brast04G295700.1.p 54 VFKGKAALSISPILPNFTKIESGGSRVKRNGSVMLTFFPAVGQRQYDYTKKQLFALSPTEVGSLISLGSAESCEFFHDPSMKSSHEGQVKK 144 9****************************************************************************************** PP Whirly 93 alkvePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsllv 139 +l++ Pl + G+fvn++v n+++k+ne++svPv+kaefav+r++l+ Brast04G295700.1.p 145 SLSITPLGNDNGYFVNINVLNNVQKTNERLSVPVTKAEFAVMRTALS 191 ********************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.30.31.10 | 4.9E-74 | 41 | 208 | IPR009044 | ssDNA-binding transcriptional regulator |
SuperFamily | SSF54447 | 1.33E-70 | 46 | 231 | IPR009044 | ssDNA-binding transcriptional regulator |
Pfam | PF08536 | 5.3E-59 | 54 | 188 | IPR013742 | Plant transcription factor |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006281 | Biological Process | DNA repair | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005739 | Cellular Component | mitochondrion | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 232 aa Download sequence Send to blast |
MLRLSRFLPS TSRRVSDLKD VLWSGSLTFE HALSTSAANV DENASARKFA SYTVFKGKAA 60 LSISPILPNF TKIESGGSRV KRNGSVMLTF FPAVGQRQYD YTKKQLFALS PTEVGSLISL 120 GSAESCEFFH DPSMKSSHEG QVKKSLSITP LGNDNGYFVN INVLNNVQKT NERLSVPVTK 180 AEFAVMRTAL SYALPHIMGW DQALTSHPQS PTALASKPRV ERPHPDSEWE R* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4kop_A | 2e-75 | 45 | 207 | 8 | 169 | Single-stranded DNA-binding protein WHY2, mitochondrial |
4kop_B | 2e-75 | 45 | 207 | 8 | 169 | Single-stranded DNA-binding protein WHY2, mitochondrial |
4kop_C | 2e-75 | 45 | 207 | 8 | 169 | Single-stranded DNA-binding protein WHY2, mitochondrial |
4kop_D | 2e-75 | 45 | 207 | 8 | 169 | Single-stranded DNA-binding protein WHY2, mitochondrial |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Single-stranded DNA-binding protein that associates with mitochondrial DNA and may play a role in the regulation of the gene expression machinery. Seems also to be required to prevent break-induced DNA rearrangements in the mitochondrial genome. Can bind to melt double-stranded DNA in vivo. {ECO:0000269|PubMed:18423020, ECO:0000269|PubMed:20551348, ECO:0000269|PubMed:22762281}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast04G295700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK249976 | 0.0 | AK249976.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf60h16, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003574931.1 | 1e-167 | single-stranded DNA-binding protein WHY2, mitochondrial | ||||
Swissprot | Q8VYF7 | 3e-75 | WHY2_ARATH; Single-stranded DNA-binding protein WHY2, mitochondrial | ||||
TrEMBL | I1HXE9 | 1e-166 | I1HXE9_BRADI; Uncharacterized protein | ||||
STRING | BRADI3G04450.1 | 1e-167 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3012 | 38 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G71260.1 | 1e-77 | WHIRLY 2 |
Link Out ? help Back to Top | |
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Phytozome | Brast04G295700.1.p |