PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast04G290300.4.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ARF
Protein Properties Length: 921aa    MW: 101681 Da    PI: 5.8862
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast04G290300.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.46.7e-24133234199
                         EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                         f+k+lt sd++++g +++p++ ae+        ++++++  +l+ +d++g++W++++i+r++++r++lt+GW+ F +a++L +gD+v+F  
  Brast04G290300.4.p 133 FCKTLTASDTSTHGGFSVPRRAAEKVfppldftQQPPAQ--ELMAKDLHGNEWKFRHIFRGQPKRHLLTTGWSVFISAKRLVAGDSVLFI- 220
                         99*****************************86555544..8************************************************. PP

                         -SSSEE..EEEEE-S CS
                  B3  85 dgrsefelvvkvfrk 99 
                          ++++ +l+++++r+
  Brast04G290300.4.p 221 -WNDNNQLLLGIRRA 234
                         .7777778***9997 PP
2Auxin_resp120.61.2e-39259342183
          Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                         aahaast+s F+++YnPras+seFv++++k++ka++ +++svGmRf+m fete+ss rr++Gt++g+sdldp rWpnS+Wrs+k
  Brast04G290300.4.p 259 AAHAASTNSRFTIFYNPRASPSEFVIPLAKYVKAVYhTRISVGMRFRMLFETEESSVRRYMGTITGISDLDPARWPNSHWRSVK 342
                         79*********************************9789******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.53E-48118262IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.109.2E-42125248IPR015300DNA-binding pseudobarrel domain
CDDcd100171.19E-20132233No hitNo description
PfamPF023623.1E-22133234IPR003340B3 DNA binding domain
PROSITE profilePS5086312.971133235IPR003340B3 DNA binding domain
SMARTSM010191.2E-24133235IPR003340B3 DNA binding domain
PfamPF065071.5E-34259342IPR010525Auxin response factor
SuperFamilySSF542772.81E-8779864No hitNo description
PROSITE profilePS5174524.692788872IPR000270PB1 domain
PfamPF023092.4E-5834874IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 921 aa     Download sequence    Send to blast
MKLSPSAGGG LPDQPGSPEV AEEHKCLNSE LWHACAGPLV SLPAVGSRVL YFPQGHSEQV  60
SASTNKEIES QIPNYPNLPP QLICQLHNVT MHADAETDEV CAQMTLQPLS PELKDPFLPA  120
ELGTANKQPT NYFCKTLTAS DTSTHGGFSV PRRAAEKVFP PLDFTQQPPA QELMAKDLHG  180
NEWKFRHIFR GQPKRHLLTT GWSVFISAKR LVAGDSVLFI WNDNNQLLLG IRRANRPQTV  240
MPSSVLSSDS MHIGLLAAAA HAASTNSRFT IFYNPRASPS EFVIPLAKYV KAVYHTRISV  300
GMRFRMLFET EESSVRRYMG TITGISDLDP ARWPNSHWRS VKVGWDESTA GERQPRVSLW  360
EIEPLTTIPM YSSPFPMRLK RPWPTGLPSL YGAKEDDLTS SLMWLRDGAS PGFQSFNFGG  420
LGMNPWMQPR LDSSLLGLQP DMYQAISAAA LQNPAKQVSP SVLQFQQPQN IAGRSLVSSQ  480
ILQQVQPQFQ QMHHQNINDN TIQGHNQSEY LQQQLQCCQS FNGQKPQEQQ QQESHQQQQS  540
QCVQTPQHQQ MQEQNHSPNF QSVPNALSVF SQLSPSTQSP PSIMQTVSAF SQQQNFQDTD  600
INSLSPSNIS SMHDTLRPFP SEAGSNLQDV PRTTPVPVSD PWSSKRVAME SVIPSQSHVT  660
SSHIEQLDSA PSNIPQSSSL APLPGRECVV DQDGNSDHQN HLLFGVNIDS QSLLMQDGIP  720
GLQNDNGCIA SLQDDNDSNT IPYSTCNFLS PSQNNFPLNE ALTSSGCLDV SGYVPFSENP  780
GQVNRPPATF VKVYKSGAVG RLLDITRFSS YHELRSELGH LFGLEGQLED PVRSGWQLVF  840
VDRENDVLLV GDDPWQEFVN SVSCIKILSP QEVQQMGKQG IELLSSAPAR RLGNSCDNYV  900
SRQESRNLST GIAAVGSVEF *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1591136340388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast04G290300.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010233861.10.0auxin response factor 6 isoform X2
SwissprotA2X1A10.0ARFF_ORYSI; Auxin response factor 6
SwissprotQ6H6V40.0ARFF_ORYSJ; Auxin response factor 6
TrEMBLA0A0Q3J5G60.0A0A0Q3J5G6_BRADI; Auxin response factor
STRINGBRADI3G04920.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.20.0auxin response factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]