PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast04G282700.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family Trihelix
Protein Properties Length: 361aa    MW: 37862.3 Da    PI: 4.0499
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast04G282700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix28.83.2e-0979157170
            trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.........rergferspkqCkekwenlnkrykkikegekk 70 
                         +Wt  e+laL++a+  +++   r+ ++ ++W+ v++++         ++r   r +  Ck +we l+ +y +++ +e +
  Brast04G282700.1.p  79 EWTAAETLALVAAVAATDDGWARSVSAFQKWAIVAENLassegaggsSSRRRARPAGDCKRRWEALAAEYAAVRGWEMR 157
                         5********************************************998999999********************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.480145IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009506Cellular Componentplasmodesma
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MDPNDAGLPC IVQALASIDP SDTTVLPCIV QALAALPPSP TPKTPAPATA RAQPPPPAPE  60
SSNSMPPSPR RTRSGRAPEW TAAETLALVA AVAATDDGWA RSVSAFQKWA IVAENLASSE  120
GAGGSSSRRR ARPAGDCKRR WEALAAEYAA VRGWEMRTGG KYSEMGAAAR RKAGLPSEFD  180
TEVYGIMDAL LADSGDAGGG GGKEGLVAAG GGVADVGEEE GDGVGGEEEK EEEDEEEEED  240
GDDNEEEMHV DGGHPNASDD LEYCETETQN EPKRSQIEAW ELANKLNDNA QHIHMILEGE  300
VGDDAGQSHA PADPISPNTM ETTRQKADEL IKSLGGLVSY LNQFTDLIKD NGFEDVVGVN  360
*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast04G282700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020186600.11e-138trihelix transcription factor ASR3
TrEMBLA0A287TT781e-139A0A287TT78_HORVV; Uncharacterized protein
TrEMBLA0A446VA011e-140A0A446VA01_TRITD; Uncharacterized protein
STRINGMLOC_38633.11e-104(Hordeum vulgare)
STRINGSb04g004960.11e-103(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63532433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31270.15e-08sequence-specific DNA binding transcription factors