PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast04G275300.2.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ARR-B
Protein Properties Length: 558aa    MW: 60563.1 Da    PI: 6.805
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast04G275300.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like88.85.2e-28141194155
             G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                         kpr++W+ eLH++Fv av+qL G++kA+Pk+il+lm+v+ +t+e+v+SHLQkYRl
  Brast04G275300.2.p 141 KPRVVWSVELHRKFVAAVNQL-GIDKAVPKKILDLMNVENITRENVASHLQKYRL 194
                         79*******************.********************************8 PP
2Response_reg52.23.4e-1857340109
                         HHHHESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS--HHHHHH CS
        Response_reg  40 kekdpDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKpfdpeelvk 109
                         ++ ++Dl++ D+ mp+mdG++ll+     e++lp+i+++a+ge +++ + +  Ga d+l Kp+  e+l +
  Brast04G275300.2.p   5 NKDRFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIMLSANGETQTVMKGITHGACDYLLKPVRLEQLKT 73 
                         4566*******************87754.558***********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011031.47179IPR001789Signal transduction response regulator, receiver domain
PIRSFPIRSF0363921.3E-1491557IPR017053Response regulator B-type, plant
Gene3DG3DSA:3.40.50.23006.4E-285111No hitNo description
CDDcd001561.43E-18578No hitNo description
PfamPF000722.8E-15674IPR001789Signal transduction response regulator, receiver domain
SuperFamilySSF521721.04E-22686IPR011006CheY-like superfamily
PROSITE profilePS5129411.189138197IPR017930Myb domain
Gene3DG3DSA:1.10.10.608.7E-30138199IPR009057Homeodomain-like
SuperFamilySSF466895.73E-20139198IPR009057Homeodomain-like
TIGRFAMsTIGR015571.1E-24141194IPR006447Myb domain, plants
PfamPF002491.9E-6143193IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0009414Biological Processresponse to water deprivation
GO:0010082Biological Processregulation of root meristem growth
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0031537Biological Processregulation of anthocyanin metabolic process
GO:0048367Biological Processshoot system development
GO:0080022Biological Processprimary root development
GO:0080036Biological Processregulation of cytokinin-activated signaling pathway
GO:0080113Biological Processregulation of seed growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 558 aa     Download sequence    Send to blast
MLRENKDRFD LVISDVHMPD MDGFKLLELV GLEMDLPVIM LSANGETQTV MKGITHGACD  60
YLLKPVRLEQ LKTIWQHVVR RNTKTRGNDN DDAGQKVQNG DGENGGANRN KRQSRRDENG  120
DDGDDSDENS NENADASSQK KPRVVWSVEL HRKFVAAVNQ LGIDKAVPKK ILDLMNVENI  180
TRENVASHLQ KYRLYLKRMS MDASRQANLV AALGGRNPAY GNMNSIDVFR HYNNAYGRYP  240
PVPTTTHSQS SNLVARMNSP SAFGMHGLLS SQPLQHGHAQ TNMGTSLNDL GVNNGNMIRA  300
AQMPTMVTGT NGNSFANISN GAPLAPANRS VQPLESSNRQ HLGQIHSPST DSFSSFVGES  360
HHFPDLGRTS NTWQTAVPSN IQELGHNGSM SQATLHVNGP RNPVSSFTSA SNQIPALGNG  420
LQSQVASLAS NPLPVTFNQD ASPFTYGSST NSREVLNGNL AFSNSGINTS LPNLRIDNPI  480
VPRHTLDGSN AGDVPPLQDG RIDQQTVGNQ LHYNNDLMAT SRLQRGLSGS LDDIVVDMFR  540
PDSGNGVSFT DADWGLV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A3e-25137200164ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast04G275300.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003570765.10.0two-component response regulator ORR24
SwissprotQ6H8050.0ORR24_ORYSJ; Two-component response regulator ORR24
TrEMBLI1HXZ90.0I1HXZ9_BRADI; Two-component response regulator
STRINGBRADI3G06120.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.13e-84response regulator 12
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]