PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast04G275300.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ARR-B
Protein Properties Length: 616aa    MW: 66880.4 Da    PI: 6.7375
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast04G275300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like88.65.9e-28199252155
             G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                         kpr++W+ eLH++Fv av+qL G++kA+Pk+il+lm+v+ +t+e+v+SHLQkYRl
  Brast04G275300.1.p 199 KPRVVWSVELHRKFVAAVNQL-GIDKAVPKKILDLMNVENITRENVASHLQKYRL 252
                         79*******************.********************************8 PP
2Response_reg76.21.2e-25231311109
                         EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHH CS
        Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalea 89 
                         vl vdD+p+ +++l+++l + +y +v+++ ++  al++l+e++  +Dl++ D+ mp+mdG++ll+     e++lp+i+++a+ge +++ + 
  Brast04G275300.1.p  23 VLAVDDDPTCLKVLESLLLRCDY-HVTTTGQAATALRMLRENKdrFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIMLSANGETQTVMKG 111
                         799********************.***************888889*******************87754.558****************** PP

                         HHTTESEEEESS--HHHHHH CS
        Response_reg  90 lkaGakdflsKpfdpeelvk 109
                         +  Ga d+l Kp+  e+l +
  Brast04G275300.1.p 112 ITHGACDYLLKPVRLEQLKT 131
                         *****************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363922.1E-1811615IPR017053Response regulator B-type, plant
SuperFamilySSF521721.85E-3520144IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23009.8E-4320169No hitNo description
SMARTSM004484.6E-3221133IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011043.3222137IPR001789Signal transduction response regulator, receiver domain
PfamPF000723.7E-2323132IPR001789Signal transduction response regulator, receiver domain
CDDcd001569.69E-2824136No hitNo description
PROSITE profilePS5129411.189196255IPR017930Myb domain
Gene3DG3DSA:1.10.10.609.9E-30196257IPR009057Homeodomain-like
SuperFamilySSF466896.63E-20197256IPR009057Homeodomain-like
TIGRFAMsTIGR015571.2E-24199252IPR006447Myb domain, plants
PfamPF002492.2E-6201251IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0009414Biological Processresponse to water deprivation
GO:0010082Biological Processregulation of root meristem growth
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0031537Biological Processregulation of anthocyanin metabolic process
GO:0048367Biological Processshoot system development
GO:0080022Biological Processprimary root development
GO:0080036Biological Processregulation of cytokinin-activated signaling pathway
GO:0080113Biological Processregulation of seed growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 616 aa     Download sequence    Send to blast
MTVEGRVSVV DSGRDRFPVG MRVLAVDDDP TCLKVLESLL LRCDYHVTTT GQAATALRML  60
RENKDRFDLV ISDVHMPDMD GFKLLELVGL EMDLPVIMLS ANGETQTVMK GITHGACDYL  120
LKPVRLEQLK TIWQHVVRRN TKTRGNDNDD AGQKVQNGDG ENGGANRNKR QSRRDENGDD  180
GDDSDENSNE NADASSQKKP RVVWSVELHR KFVAAVNQLG IDKAVPKKIL DLMNVENITR  240
ENVASHLQKY RLYLKRMSMD ASRQANLVAA LGGRNPAYGN MNSIDVFRHY NNAYGRYPPV  300
PTTTHSQSSN LVARMNSPSA FGMHGLLSSQ PLQHGHAQTN MGTSLNDLGV NNGNMIRAAQ  360
MPTMVTGTNG NSFANISNGA PLAPANRSVQ PLESSNRQHL GQIHSPSTDS FSSFVGESHH  420
FPDLGRTSNT WQTAVPSNIQ ELGHNGSMSQ ATLHVNGPRN PVSSFTSASN QIPALGNGLQ  480
SQVASLASNP LPVTFNQDAS PFTYGSSTNS REVLNGNLAF SNSGINTSLP NLRIDNPIVP  540
RHTLDGSNAG DVPPLQDGRI DQQTVGNQLH YNNDLMATSR LQRGLSGSLD DIVVDMFRPD  600
SGNGVSFTDA DWGLV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A3e-25195258164ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast04G275300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003570765.10.0two-component response regulator ORR24
SwissprotQ6H8050.0ORR24_ORYSJ; Two-component response regulator ORR24
TrEMBLI1HXZ90.0I1HXZ9_BRADI; Two-component response regulator
STRINGBRADI3G06120.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP81473447
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.11e-111response regulator 12
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]