PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Brast04G271000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 300aa MW: 31994.9 Da PI: 8.3944 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 59.7 | 6.2e-19 | 11 | 56 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEde l ++v+++G ++W++I r ++ gR++k+c++rw + Brast04G271000.1.p 11 KGPWSPEEDEALRRLVERHGARNWTAIGRGIP-GRSGKSCRLRWCNQ 56 79******************************.***********985 PP | |||||||
2 | Myb_DNA-binding | 53.6 | 5e-17 | 63 | 106 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r ++T+eEd +++a+++lG++ W++Iar ++ gRt++ +k++w++ Brast04G271000.1.p 63 RRPFTAEEDASILRAHARLGNR-WAAIARLLP-GRTDNAVKNHWNS 106 679*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 25.481 | 6 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.43E-31 | 8 | 104 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.6E-17 | 10 | 59 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.8E-18 | 11 | 56 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.8E-25 | 12 | 64 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.69E-16 | 13 | 55 | No hit | No description |
SMART | SM00717 | 4.4E-15 | 62 | 110 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.9E-15 | 63 | 106 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 20.461 | 63 | 112 | IPR017930 | Myb domain |
CDD | cd00167 | 4.90E-12 | 65 | 108 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.2E-23 | 65 | 112 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 300 aa Download sequence Send to blast |
MGAEAECDRI KGPWSPEEDE ALRRLVERHG ARNWTAIGRG IPGRSGKSCR LRWCNQLSPQ 60 VERRPFTAEE DASILRAHAR LGNRWAAIAR LLPGRTDNAV KNHWNSSLKR KLATATAAWE 120 GEAVSDGSGS GESEPRPCKR ASPGPESPTG SDRSELSHGS GQVFRPVPRA GGFDAIISAD 180 VRPPPPRPEE DPLTSLSLSL PGLDQGFHHD SARSHFQELS PSPRSPSPPS PPTPAYPFSG 240 DLVAAMQEMI RAEVRKYMSG VGLPAGCGTG AVGEACIPQL VEGVMRAAAE RVGGVVTRQ* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 4e-41 | 8 | 114 | 4 | 110 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00653 | PBM | Transfer from LOC_Os02g09480 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Brast04G271000.1.p |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | DQ353858 | 0.0 | DQ353858.1 Triticum aestivum MYB transcription factor TaMYB1 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020180953.1 | 1e-176 | transcription factor MYB44-like | ||||
Swissprot | O23160 | 2e-69 | MYB73_ARATH; Transcription factor MYB73 | ||||
TrEMBL | A0A3B6QFG9 | 1e-175 | A0A3B6QFG9_WHEAT; Uncharacterized protein | ||||
STRING | MLOC_7426.1 | 1e-169 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP789 | 38 | 154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G67300.1 | 1e-64 | myb domain protein r1 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Brast04G271000.1.p |
Publications ? help Back to Top | |||
---|---|---|---|
|