PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Brast04G263100.1.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

GRAS

Protein Properties

Length: 401aa MW: 42436.8 Da PI: 5.7104

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast04G263100.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	288.2	2.3e-88	30	400	3	374
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 l+l+cA ++ gdl+ a++l r a p+g++ Rla++f++AL a ++ +++ + +s++ +++ss ++aa+ +++++ P+l+f Brast04G263100.1.p 30 ALVLACAGLLHRGDLAGARRLADRALSAADPRGEASDRLAHHFARALLALDNGGSPSPVP--VASSSVPSSSSPTAAAYLAYNKIAPFLRF 118 6889*****************************************9998883333332..2333333458888899999****** PP GRAS 94 shltaNqaIleavege....ervHiiDfdisqGlQWpaLlqaLasRp...egpp.slRiTgvgspesgskeeleetgerLakfAeelgvpf 176 +hltaNqaIlea+ ++ + +Hi+D+d+ +G+QWp+LlqaL +R+ ++pp ++R+Tg g+ ++++l +tg+rL+ fA+++++pf Brast04G263100.1.p 119 AHLTANQAILEAFFSDrphpRVLHIVDLDAAHGVQWPPLLQALRDRAaaaDDPPlEVRVTGAGP----DRDALLRTGNRLRAFAASIDLPF 205 *********9887886677*******************988855666*****....9****************** PP GRAS 177 efnvlvakrledl..eleeLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nsesFlerfleale. 262 +f++lv + + eL+++p +E+laVn+v+ lhrl ++++l+ +L vks++P vv+++e+e + + ++ +r++ a++ Brast04G263100.1.p 206 RFHPLVIPCPGAAsaSGLELELHPgEETLAVNCVFFLHRLS-NDAELAT----FLGWVKSMNPAVVTIAEREGSSePADELPRRVAAAMDf 291 *8875555500555667777999*********7.5555555....***************9997899******74 PP GRAS 263 yysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrve 352 yy+a+fd+lea++++ s er vE+e+lgrei vv +g+ ++ +e W ++ + aG++p p s +aa+qa+lllr ++ s+gy e Brast04G263100.1.p 292 YYAAVFDALEATVAPGSAERLAVEEEILGREIDAVVDGRGEG----NRGFEAWAAAARGAGLSPRPASAFAAAQARLLLRLHYpSEGYAAE 378 7899****************************999998....99*************************************** PP GRAS 353 eesgslvlgWkdrpLvsvSaWr 374 e +g+ +lgW++r+L+svS+W+ Brast04G263100.1.p 379 EAHGACFLGWQRRTLMSVSSWQ 400 *******************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	47.506	2	379	IPR005202	Transcription factor GRAS
Pfam	PF03514	7.9E-86	30	400	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 401 aa Download sequence Send to blast
MLGPPEPDDD DATASASPPR HHGPDPTPRA LVLACAGLLH RGDLAGARRL ADRALSAADP 60 RGEASDRLAH HFARALLALD NGGSPSPVPV ASSSVPSSSS PTAAAYLAYN KIAPFLRFAH 120 LTANQAILEA FFSDRPHPRV LHIVDLDAAH GVQWPPLLQA LRDRAAAADD PPLEVRVTGA 180 GPDRDALLRT GNRLRAFAAS IDLPFRFHPL VIPCPGAASA SGLELELHPG EETLAVNCVF 240 FLHRLSNDAE LATFLGWVKS MNPAVVTIAE REGSSEPADE LPRRVAAAMD FYYAAVFDAL 300 EATVAPGSAE RLAVEEEILG REIDAVVDGR GEGNRGFEAW AAAARGAGLS PRPASAFAAA 360 QARLLLRLHY PSEGYAAEEA HGACFLGWQR RTLMSVSSWQ *

Sequence ? help Back to Top

Protein Sequence Length: 401 aa Download sequence Send to blast

MLGPPEPDDD DATASASPPR HHGPDPTPRA LVLACAGLLH RGDLAGARRL ADRALSAADP  60
RGEASDRLAH HFARALLALD NGGSPSPVPV ASSSVPSSSS PTAAAYLAYN KIAPFLRFAH  120
LTANQAILEA FFSDRPHPRV LHIVDLDAAH GVQWPPLLQA LRDRAAAADD PPLEVRVTGA  180
GPDRDALLRT GNRLRAFAAS IDLPFRFHPL VIPCPGAASA SGLELELHPG EETLAVNCVF  240
FLHRLSNDAE LATFLGWVKS MNPAVVTIAE REGSSEPADE LPRRVAAAMD FYYAAVFDAL  300
EATVAPGSAE RLAVEEEILG REIDAVVDGR GEGNRGFEAW AAAARGAGLS PRPASAFAAA  360
QARLLLRLHY PSEGYAAEEA HGACFLGWQR RTLMSVSSWQ *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_A	7e-45	35	399	25	377	Protein SCARECROW
5b3h_D	7e-45	35	399	25	377	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription regulator that controls rice tillering by initiating axillary buds and promoting their outgrowth. Rice tiller is a specialized grain-bearing branch that is formed on the unelongated basal internode and grows independently of the mother stem (culm) by means of its own adventitious roots. {ECO:0000269\|PubMed:12687001}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast04G263100.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003571074.1	0.0	protein MONOCULM 1
Swissprot	Q84MM9	1e-120	MOC_ORYSJ; Protein MONOCULM 1
TrEMBL	I1HYD1	0.0	I1HYD1_BRADI; Uncharacterized protein
STRING	BRADI3G07160.1	0.0	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3653	34	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G55580.1	7e-55	GRAS family protein

Link Out ? help Back to Top
Phytozome	Brast04G263100.1.p

Publications ? help Back to Top
Li X, et al. Control of tillering in rice. Nature, 2003. 422(6932): p. 618-21 [PMID:12687001] Sun F, et al. Identification and functional analysis of the MOC1 interacting protein 1. J Genet Genomics, 2010. 37(1): p. 69-77 [PMID:20171579] Sanyal A, et al. Orthologous comparisons of the Hd1 region across genera reveal Hd1 gene lability within diploid Oryza species and disruptions to microsynteny in Sorghum. Mol. Biol. Evol., 2010. 27(11): p. 2487-506 [PMID:20522726] Yan WH, et al. A major QTL, Ghd8, plays pleiotropic roles in regulating grain productivity, plant height, and heading date in rice. Mol Plant, 2011. 4(2): p. 319-30 [PMID:21148627] Xu C, et al. Degradation of MONOCULM 1 by APC/C(TAD1) regulates rice tillering. Nat Commun, 2012. 3: p. 750 [PMID:22434193] Lin Q, et al. Rice APC/C(TE) controls tillering by mediating the degradation of MONOCULM 1. Nat Commun, 2012. 3: p. 752 [PMID:22434195] Liang WH,Shang F,Lin QT,Lou C,Zhang J Tillering and panicle branching genes in rice. Gene, 2014. 537(1): p. 1-5 [PMID:24345551] Zhang B, et al. Novel function of a putative MOC1 ortholog associated with spikelet number per spike in common wheat. Sci Rep, 2015. 5: p. 12211 [PMID:26197925]