PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast04G249800.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 581aa    MW: 61635.6 Da    PI: 8.7988
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast04G249800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.87.3e-12378420552
                         HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHH CS
                 HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIk 52 
                         h + ErrRR+r+N++f+ Lr llP+       K++Ka++L  + eY++
  Brast04G249800.1.p 378 HMISERRRRERLNESFQALRALLPPG-----SKNDKATVLANTLEYMN 420
                         8899********************95.....5**************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.148373422IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.77E-16375445IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-14377441IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-9378420IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.6E-11379428IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.25E-4388422No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 581 aa     Download sequence    Send to blast
MDTLFVLSQE SRLRILQQAA ARVPGCAYIC VWAPINRPGG AQQQLLLLPP PLSSTRSRGH  60
LLCVDAWLRG DVGDRGRALF QAYRGSLCGA VSGRVPGWAF REGRPYMELP EHDLNSSASM  120
PVQLQFYQMA AFMGCESGEI EVGVSSTTAA APSLRASVEQ VFSEDFFQQS LLEELLQLPP  180
TRPSSSSSSL PSISVGSPAA DGASTSLPRS MTTTTMTMAM AASSATPSPR APSLAQPLFS  240
RHGAHGHGHG HAQRHFPSAE ADDAAMAQAM LAVISASSPS SSSPMPAPGC RGERRGSGTR  300
TAFRAYDAAL APRRAPGAAG QRMIKRGISI LRRMHVIKRG YSQNQDQQRT AVLQRRLEEE  360
QEEAAGTAPA PTSSQLHHMI SERRRRERLN ESFQALRALL PPGSKNDKAT VLANTLEYMN  420
ILIAQISDLE SKNRALEAAA AAQVYRPIVN GSSSRERRPA DQALVQQGLL VEVATNSSAG  480
ASTSSTPVSR EVTIRVAAPG TGDLSELVTR VLRLLKETGH GFTVVAVDAS RHPAAGGIAQ  540
ASMTLRATAA AGELDEASLR EAVAKAVEGL VTPSDDDESP *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1381386ERRRRE
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast04G249800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024316466.10.0putative transcription factor bHLH041 isoform X3
TrEMBLA0A2K2CVY20.0A0A2K2CVY2_BRADI; Uncharacterized protein
STRINGBRADI3G08280.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39773367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.12e-18bHLH family protein