PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast04G242900.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family HSF
Protein Properties Length: 313aa    MW: 32984.6 Da    PI: 6.607
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast04G242900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind1063e-33201122103
                         HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
        HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 
                         F+ k+y ++ed++++ +i w + +nsfvv+d+  f++++Lp++Fkhsnf+SFvRQLn+YgF+kv+ ++         weF+h sF +g+++
  Brast04G242900.1.p  20 FVAKTYGMVEDPATNGVIAWGSGSNSFVVIDPFVFSQTLLPTHFKHSNFSSFVRQLNTYGFRKVDPDK---------WEFAHVSFLRGQTH 101
                         9****************************************************************999.........************** PP

                         XXXXXXXXXXX CS
        HSF_DNA-bind  93 llekikrkkse 103
                         ll++i r++s+
  Brast04G242900.1.p 102 LLRQIVRRSSS 112
                         ********985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.4E-4916109IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.04E-3116109IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.104.8E-3616109IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.5E-2820109IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.1E-172043IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.1E-175870IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405983IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.1E-177183IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MMTSGGSCGG GAEAAGVAPF VAKTYGMVED PATNGVIAWG SGSNSFVVID PFVFSQTLLP  60
THFKHSNFSS FVRQLNTYGF RKVDPDKWEF AHVSFLRGQT HLLRQIVRRS SSGGKRKDDG  120
SACAADEHDD DGAMVAMEVA RLKQEQKAIE DRVAAMWRRV QETERRPKQM LAFLLKVVGD  180
PQVLRRLVAS TSSSSNSSSN GSSGGSEVGF HGGGPAEGAE VKRPRLLLHG DHHQRGARTM  240
PSSSPVESAG IGSGGRRDGF LYGAGVGEET FVPEPGVDFT GFYTGGDGFG DGQADAGGGG  300
DLPYAFPVDS GY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B3e-231011119131Heat shock factor protein 1
5d5v_B3e-231011119131Heat shock factor protein 1
5d5v_D3e-231011119131Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00379DAPTransfer from AT3G24520Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast04G242900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003571145.11e-141heat stress transcription factor C-2a
SwissprotQ6EUG41e-110HFC2A_ORYSJ; Heat stress transcription factor C-2a
TrEMBLI1HZ161e-140I1HZ16_BRADI; Uncharacterized protein
STRINGBRADI3G08870.11e-141(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44713470
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.11e-57heat shock transcription factor C1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]