PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast04G239100.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family G2-like
Protein Properties Length: 494aa    MW: 54227.1 Da    PI: 7.0226
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast04G239100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like98.93.5e-31107160255
             G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                         prlrWtp+LH +F++ave+LGG+e+AtPk +l++m+v gL+++hvkSHLQ+YR+
  Brast04G239100.1.p 107 PRLRWTPDLHMAFIHAVERLGGQERATPKLVLQMMNVRGLSIAHVKSHLQMYRS 160
                         8****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.766103163IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.4E-28103161IPR009057Homeodomain-like
SuperFamilySSF466898.6E-14106161IPR009057Homeodomain-like
TIGRFAMsTIGR015573.7E-22107162IPR006447Myb domain, plants
PfamPF002496.4E-9108159IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 494 aa     Download sequence    Send to blast
MITREEEEIM RDVKEKQVLV EILEDEDDGK KRSMDGIRPL DLNEGVDMGS EEGEVGDEDD  60
DGDDGGSTTD VAGSGSSSND VSGSQKGAGS GEQRVPSVRQ YNRSKLPRLR WTPDLHMAFI  120
HAVERLGGQE RATPKLVLQM MNVRGLSIAH VKSHLQMYRS KKLDHDGRQI RGSAISSVFS  180
PMDFHSMRGD RRFHDMYLQR SAGFSSRPAE QYGSFFTASR SGETSSRLYG ILQGRSPPMQ  240
TFGFKNCGFR NQEWSFNQHD MIGRRDGKAS SSSATPHLFA SSPLRRWPLA PGAGATGEHR  300
PERSFGYFTT GNNGSLAPLS RVVAPATSSA VPGPGEGNRR LPFRWHGGDG SNGAKNRSLD  360
PVVIDEALES RLERQKHLEP RAPTTPADEA RHNKRPSPET ETTDGTPDLK LSLSPTTVDT  420
YTDRTNKRKK ITAPSEQDMD DYSNKISISL SLSPPTAPMS MSMQRQEKTR GGSEEAALGQ  480
STLDLTMSIK ALE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A8e-18108162357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B8e-18108162357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C8e-18108162357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D8e-18108162357Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast04G239100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0736066e-70AK073606.1 Oryza sativa Japonica Group cDNA clone:J033048N17, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010234086.10.0uncharacterized protein LOC104583488
TrEMBLI1HZ560.0I1HZ56_BRADI; Uncharacterized protein
STRINGBRADI3G09160.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27543686
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38300.11e-34G2-like family protein