PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast04G233200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | NAC | ||||||||
Protein Properties | Length: 382aa MW: 42131.6 Da PI: 6.6572 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 165.2 | 2.3e-51 | 10 | 142 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeek.ewyfFskrdkkyatgkrknratksgyWkatgk 88 +ppGfrFhPtdeel+ +yL+kkv+ + ++l +vi+evd++k+ePwdL ++ ++ + ewyfFs++dkky+tg+r+nrat++g+Wkatg+ Brast04G233200.1.p 10 VPPGFRFHPTDEELLYYYLRKKVAYEAIDL-DVIREVDLNKLEPWDLIDrcRIGTGPQdEWYFFSHKDKKYPTGTRTNRATAAGFWKATGR 99 69****************************.9***************742455554445******************************** PP NAM 89 dkevlsk...kgelvglkktLvfykgrapkgektdWvmheyrl 128 dk++l + + + +gl+ktLvfy+grap+g+ktdW+mheyrl Brast04G233200.1.p 100 DKAILLHgdsNARRIGLRKTLVFYTGRAPHGTKTDWIMHEYRL 142 *****987666677***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 5.1E-59 | 6 | 164 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 58.432 | 10 | 164 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.1E-27 | 11 | 142 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 382 aa Download sequence Send to blast |
MHPNIAPLTV PPGFRFHPTD EELLYYYLRK KVAYEAIDLD VIREVDLNKL EPWDLIDRCR 60 IGTGPQDEWY FFSHKDKKYP TGTRTNRATA AGFWKATGRD KAILLHGDSN ARRIGLRKTL 120 VFYTGRAPHG TKTDWIMHEY RLDDDNADAP PPEDGWVVCR VFKKKSIQRG YEQPDHMLAG 180 AAELTGQSSS QFHATAGMAL PVEEMDQKHG FHQQLMHIHG GVGGFIPTFD PSMHLPQLTS 240 AETPPAFMSG SSTQAPHVGV NSQLLDDIGF PSQSQNMMKL TTPCSGGEAA GTGEMLLNGG 300 EGVRFGAGAD WSILDKLLES HQNLDQLFHG NGKLGGSAAV LAPTTLQQQQ LRMETGASSL 360 QRLPFFHYLA CDAADLLKFS K* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-50 | 5 | 166 | 12 | 167 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-50 | 5 | 166 | 12 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-50 | 5 | 166 | 12 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-50 | 5 | 166 | 12 | 167 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-50 | 5 | 166 | 15 | 170 | NAC domain-containing protein 19 |
3swm_B | 2e-50 | 5 | 166 | 15 | 170 | NAC domain-containing protein 19 |
3swm_C | 2e-50 | 5 | 166 | 15 | 170 | NAC domain-containing protein 19 |
3swm_D | 2e-50 | 5 | 166 | 15 | 170 | NAC domain-containing protein 19 |
3swp_A | 2e-50 | 5 | 166 | 15 | 170 | NAC domain-containing protein 19 |
3swp_B | 2e-50 | 5 | 166 | 15 | 170 | NAC domain-containing protein 19 |
3swp_C | 2e-50 | 5 | 166 | 15 | 170 | NAC domain-containing protein 19 |
3swp_D | 2e-50 | 5 | 166 | 15 | 170 | NAC domain-containing protein 19 |
4dul_A | 1e-50 | 5 | 166 | 12 | 167 | NAC domain-containing protein 19 |
4dul_B | 1e-50 | 5 | 166 | 12 | 167 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in stress response. {ECO:0000250|UniProtKB:Q7F2L3}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast04G233200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003572085.1 | 0.0 | NAC domain-containing protein 76 | ||||
Swissprot | Q5Z6B6 | 1e-102 | NAC76_ORYSJ; NAC domain-containing protein 76 | ||||
TrEMBL | I1HZ99 | 0.0 | I1HZ99_BRADI; Uncharacterized protein | ||||
STRING | BRADI3G09520.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3461 | 37 | 81 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G79580.3 | 1e-80 | NAC family protein |
Link Out ? help Back to Top | |
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Phytozome | Brast04G233200.1.p |
Publications ? help Back to Top | |||
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