PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast04G226200.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | MYB | ||||||||
Protein Properties | Length: 332aa MW: 36959.2 Da PI: 5.8543 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.2 | 1.6e-17 | 8 | 51 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 r +W++eE e+l + v+++G+++W tIa+ ++ gR++ qc+ rw+ Brast04G226200.2.p 8 RVKWSEEENEILTQMVNKHGMKNWQTIAHAIP-GRSAQQCRQRWR 51 789*****************************.***********8 PP | |||||||
2 | Myb_DNA-binding | 39.4 | 1.4e-12 | 60 | 102 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 + +W+++E+++l++a++ +G++ W+ ++++ gRt +k++w+ Brast04G226200.2.p 60 KEAWSQQEELRLIRAHQIYGTK-WREMVKHFP-GRTNGALKDYWR 102 579*******************.*********.***********7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 18.968 | 1 | 58 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.43E-25 | 7 | 101 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.8E-16 | 7 | 56 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.86E-16 | 10 | 51 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.2E-20 | 10 | 63 | IPR009057 | Homeodomain-like |
Pfam | PF13921 | 1.4E-15 | 11 | 71 | No hit | No description |
PROSITE profile | PS51294 | 14.486 | 59 | 109 | IPR017930 | Myb domain |
SMART | SM00717 | 7.1E-10 | 59 | 107 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.65E-9 | 62 | 102 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.1E-15 | 64 | 109 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 332 aa Download sequence Send to blast |
MNSEGNARVK WSEEENEILT QMVNKHGMKN WQTIAHAIPG RSAQQCRQRW RYKVDSAINK 60 EAWSQQEELR LIRAHQIYGT KWREMVKHFP GRTNGALKDY WRGPMKRKLD SYLASGLLEQ 120 LPDVLENMSV PQNSDSDILK ETTASDIPNE TEGLFDRNEL PSGQPTSSKS KLGLTERGES 180 ADMSEGKNAD FMYVRAVDAH SADAPQKIIV RSEQHARTRR KLDILSSPVE LKASTVAVNS 240 ERSLQKKEQM GPAVGGISPS NGCLDISPEV PSQYANTFVS PNGSHQPNDV HSAGTSDPCS 300 PELDISDLME MSYFDSFMIF PPDSPHDGNS L* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 5e-24 | 11 | 111 | 10 | 110 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast04G226200.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010234127.1 | 0.0 | transcription factor MYB3R-2 isoform X1 | ||||
Refseq | XP_010234128.1 | 0.0 | transcription factor MYB3R-2 isoform X1 | ||||
TrEMBL | A0A0Q3F451 | 0.0 | A0A0Q3F451_BRADI; Uncharacterized protein | ||||
STRING | BRADI3G10067.1 | 0.0 | (Brachypodium distachyon) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G11510.1 | 6e-41 | myb domain protein 3r-4 |
Link Out ? help Back to Top | |
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Phytozome | Brast04G226200.2.p |