PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Brast04G226200.1.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

MYB

Protein Properties

Length: 332aa MW: 36959.2 Da PI: 5.8543

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast04G226200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.2	1.6e-17	8	51	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 r +W++eE e+l + v+++G+++W tIa+ ++ gR++ qc+ rw+ Brast04G226200.1.p 8 RVKWSEEENEILTQMVNKHGMKNWQTIAHAIP-GRSAQQCRQRWR 51 789***************************.*********8 PP
2	Myb_DNA-binding	39.4	1.4e-12	60	102	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 + +W+++E+++l++a++ +G++ W+ ++++ gRt +k++w+ Brast04G226200.1.p 60 KEAWSQQEELRLIRAHQIYGTK-WREMVKHFP-GRTNGALKDYWR 102 579*****************.*****.*********7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	18.968	1	58	IPR017930	Myb domain
SuperFamily	SSF46689	2.43E-25	7	101	IPR009057	Homeodomain-like
SMART	SM00717	8.8E-16	7	56	IPR001005	SANT/Myb domain
CDD	cd00167	5.86E-16	10	51	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.2E-20	10	63	IPR009057	Homeodomain-like
Pfam	PF13921	1.4E-15	11	71	No hit	No description
PROSITE profile	PS51294	14.486	59	109	IPR017930	Myb domain
SMART	SM00717	7.1E-10	59	107	IPR001005	SANT/Myb domain
CDD	cd00167	1.65E-9	62	102	No hit	No description
Gene3D	G3DSA:1.10.10.60	3.1E-15	64	109	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 332 aa Download sequence Send to blast
MNSEGNARVK WSEEENEILT QMVNKHGMKN WQTIAHAIPG RSAQQCRQRW RYKVDSAINK 60 EAWSQQEELR LIRAHQIYGT KWREMVKHFP GRTNGALKDY WRGPMKRKLD SYLASGLLEQ 120 LPDVLENMSV PQNSDSDILK ETTASDIPNE TEGLFDRNEL PSGQPTSSKS KLGLTERGES 180 ADMSEGKNAD FMYVRAVDAH SADAPQKIIV RSEQHARTRR KLDILSSPVE LKASTVAVNS 240 ERSLQKKEQM GPAVGGISPS NGCLDISPEV PSQYANTFVS PNGSHQPNDV HSAGTSDPCS 300 PELDISDLME MSYFDSFMIF PPDSPHDGNS L*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	5e-24	11	111	10	110	B-MYB
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast04G226200.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010234127.1	0.0	transcription factor MYB3R-2 isoform X1
Refseq	XP_010234128.1	0.0	transcription factor MYB3R-2 isoform X1
TrEMBL	A0A0Q3F451	0.0	A0A0Q3F451_BRADI; Uncharacterized protein
STRING	BRADI3G10067.1	0.0	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP14263	17	23

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G11510.1	6e-41	myb domain protein 3r-4

Link Out ? help Back to Top
Phytozome	Brast04G226200.1.p