PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast04G226000.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MYB
Protein Properties Length: 375aa    MW: 41729.9 Da    PI: 8.5561
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast04G226000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.64.3e-1659105148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         r rW++eE + l++ v+ lG+++W+tIar ++  R+ +qc++rw  yl
  Brast04G226000.1.p  59 RRRWSEEENDVLIQMVQNLGTKNWSTIARAIP-LRSCYQCRERWTYYL 105
                         78******************************.9**********9886 PP
2Myb_DNA-binding44.53.5e-14111155147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         r++W+++++  l++a++++G++ W   a+ ++ gRt+k +k++w+ +
  Brast04G226000.1.p 111 RQAWSEQDEVTLIHAHEMHGNK-WCELAKLFP-GRTGKAVKNHWNCH 155
                         89********************.*********.***********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.00454105IPR017930Myb domain
SuperFamilySSF466892.61E-2657152IPR009057Homeodomain-like
SMARTSM007174.3E-1458107IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.5E-1961112IPR009057Homeodomain-like
CDDcd001677.25E-1361105No hitNo description
PfamPF139212.4E-1362118No hitNo description
PROSITE profilePS5129422.03106160IPR017930Myb domain
SMARTSM007171.9E-14110158IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.4E-20113161IPR009057Homeodomain-like
CDDcd001671.08E-10113156No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MPPQTGDGLP IRRSTSRSSQ MRGIAQEHAK LQDAPSKNAK WRTVECIHRN TGVYSFKKRR  60
RWSEEENDVL IQMVQNLGTK NWSTIARAIP LRSCYQCRER WTYYLNPALN RQAWSEQDEV  120
TLIHAHEMHG NKWCELAKLF PGRTGKAVKN HWNCHMKRKL KSYLARGLLK QFQNLPVDPS  180
VSNRGWSTLK GSQDSFNNNQ LPSDLLIWSE SKRGLTETGE NTSMLDGQSS DSIRSVSIGK  240
PMSPSPKGFG ARSVDAQPKV DGQIDISKSP VVTENDTEKV VSSSSVDLKV CVATPSFARS  300
TSEEKQMSYT GLSPAHSSQS RYAHFDEISS GADLELPEPH QSDIADLLDM SYCESLMIIP  360
PDSPQSGNGC VAGM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-286216210110B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast04G226000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014756283.10.0myb-like protein AA isoform X2
TrEMBLA0A2K2CWB20.0A0A2K2CWB2_BRADI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP16796912
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11510.11e-41myb domain protein 3r-4