PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast04G222000.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family G2-like
Protein Properties Length: 392aa    MW: 42697.5 Da    PI: 7.3289
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast04G222000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like100.89e-32214269156
             G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                         k+r++W+peLH+rF++a++qLGGs++AtPk+i+elmkv+gLt+++vkSHLQkYRl+
  Brast04G222000.1.p 214 KARRCWAPELHRRFLQALQQLGGSHVATPKQIRELMKVDGLTNDEVKSHLQKYRLH 269
                         68****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.868211271IPR017930Myb domain
SuperFamilySSF466892.87E-16212271IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-27212272IPR009057Homeodomain-like
TIGRFAMsTIGR015574.7E-27214269IPR006447Myb domain, plants
PfamPF002491.7E-6216267IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:0055062Biological Processphosphate ion homeostasis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MQMAMEDTRR RFRDYLLALE EERRKIHVFQ RELPLCLDLV TQTIEGMKSQ MDAVVGSEET  60
VSDHGPVLEE FIPLKPSLSL CSSEEESTHA VAPAKKDESE RARPPTPETK KAMPDWLQSV  120
QLWSQEPQQS CTNKELPRKP VALNATKTGG AFHPFEKEKP ELPASSTTAV VGDSCGDKAT  180
SEDTEKKDNG KDMEKDNKEG QSSQQQQQQQ HNRKARRCWA PELHRRFLQA LQQLGGSHVA  240
TPKQIRELMK VDGLTNDEVK SHLQKYRLHT TRRPSSAAAA AQSNAAQPAA PQFVVVGSCI  300
WVPPQEYAAA AAAAAQQQQQ GASNSAAAVY APVATLPSSS SALHVSSKKK QTTRNSRHSE  360
EQRSGDASSS AGSPAVSSSS QTTSAAEPLP D*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A3e-13214267255Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B3e-13214267255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A3e-13214267255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C3e-13214267255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D3e-13214267255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F3e-13214267255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H3e-13214267255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J3e-13214267255Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that may play a role in response to nitrogen. May be involved in a time-dependent signaling for transcriptional regulation of nitrate-responsive genes. Binds specifically to the DNA sequence motif 5'-GAATC-3' or 5'-GAATATTC-3'. Represses the activity of its own promoter trough binding to these motifs.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00160DAPTransfer from AT1G25550Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast04G222000.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by nitrate. {ECO:0000269|PubMed:23324170}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0912662e-94FP091266.1 Phyllostachys edulis cDNA clone: bphylf038j06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003572723.10.0transcription factor NIGT1
SwissprotQ6Z8691e-120NIGT1_ORYSJ; Transcription factor NIGT1
TrEMBLI1HZP00.0I1HZP0_BRADI; Uncharacterized protein
STRINGBRADI3G10730.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP64703754
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25550.12e-67G2-like family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Sawaki N, et al.
    A nitrate-inducible GARP family gene encodes an auto-repressible transcriptional repressor in rice.
    Plant Cell Physiol., 2013. 54(4): p. 506-17
    [PMID:23324170]