PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast04G218100.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | FAR1 | ||||||||
Protein Properties | Length: 792aa MW: 91281.4 Da PI: 7.0878 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 67.2 | 4.4e-21 | 183 | 264 | 2 | 91 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fYn+YA +GF+ ++ +++++ +k + C+++gk++++++ +k+r+t+++++t+C+ak+ vk++ +g+we t++++eHnH+l+p Brast04G218100.2.p 183 FYNTYALLTGFTAKRGSNYRR------KKFHIECNRSGKSTPTQDV-KKKRKTNSVEKTNCQAKVIVKLT-KGQWEFTTVRNEHNHPLCP 264 9******************99......45779**********9988.9**********************.9****************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 9.4E-19 | 183 | 264 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 1.2E-26 | 386 | 477 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 9.124 | 668 | 704 | IPR007527 | Zinc finger, SWIM-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 792 aa Download sequence Send to blast |
MTEMDTELDK AEAEIAGNSK RMRGTYIVAG DEGSPVPKLH RKKASKNTKT MTSASELSKE 60 SVAGQSIIEE ILQPACDNYQ ELSSDSIENN TEGLLADELD KQTNSVDHSL QQAKEQNHLH 120 DNVESNEMLR NNTSNESDSD SSSGSDSESE LGKYFYPKFE QLETARIPES GMKFQTLEDA 180 HGFYNTYALL TGFTAKRGSN YRRKKFHIEC NRSGKSTPTQ DVKKKRKTNS VEKTNCQAKV 240 IVKLTKGQWE FTTVRNEHNH PLCPNPSLTS FFLSHKHMQS EEKMFLKVLQ QSRIPPNKVM 300 KIFRRMRSSF GNITFKNKDV TDLQYTEQQR SENSDVESAL KHLKEFELQN PMFFYAKQTD 360 EGNIVQSIFW TDVRSRMDYE IFGDFLSFDT TYTTSRNNMI FVPIIGINNH GRTLLFGCAL 420 LHDGKAETFK WMFQTLLQVM GEKLPGSLIT NQDEAMAKAI AEVMPQVRHR FCKWDVMGKA 480 QEKIAAFMTA RGNMKAELDR LVDNSLTESE FEEGWGALLN RYDANRNDYL QLMWQSRKNW 540 VPAYFRQDFY PFVEPLGRGE VMNLLFKDYV LPKDRIEKFI ESYVEIQKKI TKTDDEDRLQ 600 RGTAPSCFSL QPIEKHGAII YTRQIFLKVQ RELLHSTAFN VQEVQRGAVY RLLKVFNYEN 660 PEFDRDYFEV LVELGSNTFK CQCAKFTRDG ILCCHIFRLF TQFGINEIPG QYIVPRWTDK 720 FKEDMTKQCQ GKSLEQANNR TRYAMLMSKM ADLGKKICGD GAKCNTFMLE FDKIQEKLVS 780 TEGENLLNND S* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast04G218100.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014755491.1 | 0.0 | protein FAR1-RELATED SEQUENCE 5 isoform X1 | ||||
Refseq | XP_024316215.1 | 0.0 | protein FAR1-RELATED SEQUENCE 5 isoform X1 | ||||
TrEMBL | A0A0Q3HM00 | 0.0 | A0A0Q3HM00_BRADI; Uncharacterized protein | ||||
STRING | BRADI3G10450.1 | 0.0 | (Brachypodium distachyon) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 5e-88 | FAR1-related sequence 5 |
Link Out ? help Back to Top | |
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Phytozome | Brast04G218100.2.p |