PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast04G218100.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family FAR1
Protein Properties Length: 792aa    MW: 91281.4 Da    PI: 7.0878
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast04G218100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR167.24.4e-21183264291
                FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                         fYn+YA  +GF+ ++ +++++      +k +  C+++gk++++++  +k+r+t+++++t+C+ak+ vk++ +g+we t++++eHnH+l+p
  Brast04G218100.1.p 183 FYNTYALLTGFTAKRGSNYRR------KKFHIECNRSGKSTPTQDV-KKKRKTNSVEKTNCQAKVIVKLT-KGQWEFTTVRNEHNHPLCP 264
                         9******************99......45779**********9988.9**********************.9****************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031019.4E-19183264IPR004330FAR1 DNA binding domain
PfamPF105511.2E-26386477IPR018289MULE transposase domain
PROSITE profilePS509669.124668704IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 792 aa     Download sequence    Send to blast
MTEMDTELDK AEAEIAGNSK RMRGTYIVAG DEGSPVPKLH RKKASKNTKT MTSASELSKE  60
SVAGQSIIEE ILQPACDNYQ ELSSDSIENN TEGLLADELD KQTNSVDHSL QQAKEQNHLH  120
DNVESNEMLR NNTSNESDSD SSSGSDSESE LGKYFYPKFE QLETARIPES GMKFQTLEDA  180
HGFYNTYALL TGFTAKRGSN YRRKKFHIEC NRSGKSTPTQ DVKKKRKTNS VEKTNCQAKV  240
IVKLTKGQWE FTTVRNEHNH PLCPNPSLTS FFLSHKHMQS EEKMFLKVLQ QSRIPPNKVM  300
KIFRRMRSSF GNITFKNKDV TDLQYTEQQR SENSDVESAL KHLKEFELQN PMFFYAKQTD  360
EGNIVQSIFW TDVRSRMDYE IFGDFLSFDT TYTTSRNNMI FVPIIGINNH GRTLLFGCAL  420
LHDGKAETFK WMFQTLLQVM GEKLPGSLIT NQDEAMAKAI AEVMPQVRHR FCKWDVMGKA  480
QEKIAAFMTA RGNMKAELDR LVDNSLTESE FEEGWGALLN RYDANRNDYL QLMWQSRKNW  540
VPAYFRQDFY PFVEPLGRGE VMNLLFKDYV LPKDRIEKFI ESYVEIQKKI TKTDDEDRLQ  600
RGTAPSCFSL QPIEKHGAII YTRQIFLKVQ RELLHSTAFN VQEVQRGAVY RLLKVFNYEN  660
PEFDRDYFEV LVELGSNTFK CQCAKFTRDG ILCCHIFRLF TQFGINEIPG QYIVPRWTDK  720
FKEDMTKQCQ GKSLEQANNR TRYAMLMSKM ADLGKKICGD GAKCNTFMLE FDKIQEKLVS  780
TEGENLLNND S*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast04G218100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014755491.10.0protein FAR1-RELATED SEQUENCE 5 isoform X1
RefseqXP_024316215.10.0protein FAR1-RELATED SEQUENCE 5 isoform X1
TrEMBLA0A0Q3HM000.0A0A0Q3HM00_BRADI; Uncharacterized protein
STRINGBRADI3G10450.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.15e-88FAR1-related sequence 5