PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast04G217700.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family FAR1
Protein Properties Length: 727aa    MW: 83771.3 Da    PI: 6.6896
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast04G217700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR147.65.5e-15113194291
                FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                         +Y+++A   GF   + +++ +      +k ++ C+++ k +++++  +++r+  + +rt+C+ak++vk   +g+we t +++eHnH+l+p
  Brast04G217700.1.p 113 YYSTHALLSGFVAIRGQNYVR------KKFHLECNRSRKLTPSQDL-KRRREIDSINRTQCQAKVVVKPV-KGQWEFTAIQSEHNHPLCP 194
                         9***************99998......4678***********9988.999999***************99.9****************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.9E-13112194IPR004330FAR1 DNA binding domain
PfamPF105511.0E-31316408IPR018289MULE transposase domain
PROSITE profilePS509669.025598634IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 727 aa     Download sequence    Send to blast
MEEYINPAAY EEQSVNGTDW SSGVLPDKLE NGANSVDCSL QLAEEQNQLP DILGINGMLI  60
DDTGSGSDSD SSSGNEADKE PGKYFYPSFE ELDNQRPPEV GMKFPTLEDA NRYYSTHALL  120
SGFVAIRGQN YVRKKFHLEC NRSRKLTPSQ DLKRRREIDS INRTQCQAKV VVKPVKGQWE  180
FTAIQSEHNH PLCPSPSLTR FFLNCKHMST EEKSFLRVLQ QSSIHPKKAM KIFKRMGNSL  240
GNLPFKKKGV SNSRSAEQQR KPNSDVEKTL KHLKELELQN PCVSCTMQTD EDGIVRSIFW  300
TDARSRMDCE IFGDFISLDA TYSTNRHNMP FAPIIGINSH GRSLVLGFAL LQDQRAETFA  360
WMFRTFLQAM GGKLPRSIIT NQDEAIGKAI AEVMPQVRHR FCKFHVMTKA REKLGAFMAE  420
RGNINVELHS LVDNSLTERE FEEGWEALIE IYGASENEHL QILWQTRKNW VPAYFREDFY  480
PFVGVTKRGE GTNLLFKDFV LPKDRIEKFL EKYEEVQERI MKIDDEDRLQ SKTELSCFSL  540
QPIEKHAAHI YTRPIFQKVQ KELLHSTAFN VQEIQRGTLY RLDKVFNYEN PEFDRISFEV  600
LVTPDTNTIK CECAKFARDG ILCCHIFRLF TQFGINEIPE QYIVPRWTGK FKEEQVVLYK  660
EKCLDKHDIN QSENALRYAM LMTKVSDISK EICCDGSKCD KFMLELDKIR EKLPTMRGQI  720
PENNDS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast04G217700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003571206.10.0protein FAR1-RELATED SEQUENCE 5
TrEMBLI1HZK40.0I1HZK4_BRADI; Uncharacterized protein
STRINGBRADI3G10416.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-81FAR1-related sequence 5