PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast04G203300.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 232aa    MW: 25412.9 Da    PI: 6.2433
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast04G203300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.13.2e-1349101155
                         CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         ++ +hn+ Er RR+++N+ +  Lr+llP a   + kKls  +++ ++ +YI +Lq
  Brast04G203300.1.p  49 KKLSHNAYERDRRKQLNELYLSLRSLLPDA--DHTKKLSIPTTVCRVLKYIPELQ 101
                         6789*************************7..35666***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.96E-1646116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.50E-1048104No hitNo description
PROSITE profilePS5088813.45948100IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.5E-1049101IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.7E-1249115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.1E-954106IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MGHQLPPWTN LDLDLDLDLD LDIDEGTVAV RDATAANGTS SGSGSGSHKK LSHNAYERDR  60
RKQLNELYLS LRSLLPDADH TKKLSIPTTV CRVLKYIPEL QKQVEELEKR KEELTSANCK  120
PGVMLMSGGI ALAPTVSATC LNDKEIMVQV SLLSNTDAAA TTTLPLSKCI SVLENEGLRL  180
ISSSTFSTFG NKTYYNLHFQ RDHGALSKEC PSFCDRLEEA IKKTAGLYLQ Q*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA motif 5'-CACGTGG-3' in the promoter of iron (Fe) deficiency-inducible genes as well as of genes involved in iron homeostasis, thus contributing to basal tolerance to iron deficiency, iron uptake from soil and iron transport, particularly during seed maturation and germination. Promotes the accumulation of mugineic acid family phytosiderophores (MAs). Required for ethylene-mediated signaling during iron deficiency responses. Improves growth and yield, especially in calcareous soil with low iron availability. Promotes iron concentration in shoots and grain. {ECO:0000250|UniProtKB:Q0JFZ0}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast04G203300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003572517.11e-133protein IRON-RELATED TRANSCRIPTION FACTOR 2 isoform X5
SwissprotA2WZ603e-87IRO2_ORYSI; Protein IRON-RELATED TRANSCRIPTION FACTOR 2
TrEMBLA0A3B6CEZ01e-108A0A3B6CEZ0_WHEAT; Uncharacterized protein
STRINGBRADI3G43250.11e-109(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32803472
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56970.11e-25bHLH family protein