PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast04G195000.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family HSF
Protein Properties Length: 466aa    MW: 51651.6 Da    PI: 4.9979
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast04G195000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind1093.6e-34181092101
                         HHHHHHHHHCTGGGTTTSEES.SSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
        HSF_DNA-bind   2 Flkklyeiledeelkelisws.engnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 
                         Fl k+ye+++d++++ ++sws ++  sfvv+++ efa ++Lp+yFkhsnf+SF+RQLn+YgF+k++ e+         weF++++F kg+k
  Brast04G195000.1.p  18 FLLKTYEMVDDPSTDAVVSWSdSSDASFVVWNSPEFAARLLPTYFKHSNFSSFIRQLNTYGFRKIEPER---------WEFANEYFVKGQK 99 
                         9********************76779****************************************999.........************* PP

                         XXXXXXXXXX CS
        HSF_DNA-bind  92 ellekikrkk 101
                         +ll++i r+k
  Brast04G195000.1.p 100 HLLKNIYRRK 109
                         ********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467854.81E-3314108IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.7E-5814108IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.105.9E-3614108IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000563.7E-191841IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004476.1E-3018108IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.7E-195769IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405882IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.7E-197082IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 466 aa     Download sequence    Send to blast
MEASGGAGAR GGGGPAPFLL KTYEMVDDPS TDAVVSWSDS SDASFVVWNS PEFAARLLPT  60
YFKHSNFSSF IRQLNTYGFR KIEPERWEFA NEYFVKGQKH LLKNIYRRKP IHSHSHQPGT  120
LPDNERALFE DEIDRLAREK ATLQADLWKF KQQQSGTMFQ IEDLERRVLN MEQRQGKMIA  180
FLQQASKNPQ FVNKLVMMAE SSSIFTDAFH KKRRLSGLDY TTETAEATSF YDDHSTTSKQ  240
EMGNLLNQHF SDKLKLGLCP AIAESNLITL STQSSHEDNG SPHGNHLGCD RMGTECLPLV  300
PQMMELSDTG TSICPSKNSR FTPSVNDEGL LPCHLSLTLA SCLMDADRSQ ACNADGSTTI  360
DKGRDNPAEA TTATMDDNQK TPADFGKADA VTQRRGDARI ATEAPAAPPA VVNDKFWEQF  420
LTERPGCSET EEASSGLSRD PSMEDKGQME GNMKDGSEDM EQLKL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-23110812129Heat shock factor protein 1
5d5v_B2e-23110812129Heat shock factor protein 1
5d5v_D2e-23110812129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast04G195000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003574986.10.0heat stress transcription factor A-5
SwissprotQ6K6S50.0HSFA5_ORYSJ; Heat stress transcription factor A-5
TrEMBLI1I9S80.0I1I9S8_BRADI; Uncharacterized protein
STRINGBRADI3G43710.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP90003241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13980.11e-104HSF family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]