PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast04G194000.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C2H2
Protein Properties Length: 413aa    MW: 46500.7 Da    PI: 5.6848
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast04G194000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.60.000864467223
                        EETTTTEEESSHHHHHHHHHH..T CS
             zf-C2H2  2 kCpdCgksFsrksnLkrHirt..H 23
                         C dCgk+++++ +   H ++  H
  Brast04G194000.1.p 44 ICADCGKPCRSQTEVDLHTKRtgH 67
                        6***************99998666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS000280830IPR007087Zinc finger, C2H2
PROSITE patternPS0002804567IPR007087Zinc finger, C2H2
SuperFamilySSF469343.51E-17101165IPR009060UBA-like
Gene3DG3DSA:1.10.8.104.4E-11103157No hitNo description
CDDcd142902.33E-20111159No hitNo description
PROSITE profilePS5003011.125111152IPR015940Ubiquitin-associated domain
SMARTSM001656.6E-4113151IPR015940Ubiquitin-associated domain
PfamPF006271.5E-6113149IPR015940Ubiquitin-associated domain
SuperFamilySSF1435033.92E-25305408IPR018997PUB domain
CDDcd104617.44E-60307412No hitNo description
PfamPF094095.4E-22320390IPR018997PUB domain
SMARTSM005804.5E-21323385IPR018997PUB domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005829Cellular Componentcytosol
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MAGLSLRCGD CGVQLRSVEE AQVHAEATSH TNFAESTEAV LNLICADCGK PCRSQTEVDL  60
HTKRTGHAEF TDKTMEAAKP IDLEAPLKPA PEAMDVDASG SGEPQEMVAP EVNKEMLADL  120
EAMGFSTARA TRALHFSGNS TIEGAINWLS EHQDDPDIDE MPMVPANTNT DANKPSLTPE  180
EKKIKAQELR ERARKKKEEE ERRMEREKEK ERIRIGKELL EAKRMEEANE RKRMIELRRL  240
EKEEEKRARE KIRQKLEEDK AERRRKLGLP AEDPAASKPS APPPVEEKKS ALPVRPATKA  300
DRMRDCLRNI KQQNKEEDAK VKRAFQTLLT YIGNVVKNPD EEKYRKIRLS NATFQERVGN  360
LGGIQFLELC GFEKLEDNEF LFLARDKVDK AILNTAGAEL NSAITNPFFG VL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast04G194000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0942620.0FP094262.1 Phyllostachys edulis cDNA clone: bphylf035k19, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003574999.10.0chromatin assembly factor 1 subunit A isoform X1
TrEMBLI1I9V60.0I1I9V6_BRADI; Uncharacterized protein
STRINGBRADI3G43900.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP84641517