PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast04G188000.2.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family Trihelix
Protein Properties Length: 348aa    MW: 37300.1 Da    PI: 4.9991
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast04G188000.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix80.72e-2527125185
            trihelix   1 rWtkqevlaLiearremeerlr.rgk................lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtse 74 
                         rWt+qe+l+Lie++r +e r + rg                 + +p+W++v++++r++g+er+p+qC+++w+nl+++ykkike+e+  ++ 
  Brast04G188000.2.p  27 RWTRQEILVLIEGKRVVEVRGGgRGGrgrvaaaaaaaageaaALEPKWAAVAEYCRRHGVERGPVQCRKRWSNLAGDYKKIKEWERAAAAA 117
                         8**************88888874222344666677777777688******************************************97443 PP

            trihelix  75 ssstcpyfdql 85 
                         +    p f  +
  Brast04G188000.2.p 118 R---EPSFWAM 125
                         3...4777766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.16827101IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.606.2E-527100IPR009057Homeodomain-like
PfamPF138374.6E-1027124No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MSNAGDPAGA AAAAAATPSG RAPRLPRWTR QEILVLIEGK RVVEVRGGGR GGRGRVAAAA  60
AAAAGEAAAL EPKWAAVAEY CRRHGVERGP VQCRKRWSNL AGDYKKIKEW ERAAAAAREP  120
SFWAMRNDAR RERRLPGFFD REVYDILEGR GRGIVAGSSG GNAAGEEEAV VRVDEEDEEE  180
EEEKGKEKEV GVAEETVFDS GRPAGDDTLF SEDEEGEQEE TPATTQAPPP AVVALPISAG  240
TSSKDKQPRQ QGQGTERGAS PTQQQQSGQK RQRTGNGDSE AGKEGTAGLQ GKLLEILDRN  300
SRMVAAQLEA QNVNWERDRE QRRDQADSLA VVLGRLADAL GRIADKL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast04G188000.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010235471.11e-173trihelix transcription factor ASR3 isoform X3
TrEMBLI1IA141e-172I1IA14_BRADI; Uncharacterized protein
STRINGBRADI3G44370.51e-170(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33550.14e-35Trihelix family protein