PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast04G186900.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | ERF | ||||||||
Protein Properties | Length: 245aa MW: 26317.4 Da PI: 5.055 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59 | 1.1e-18 | 39 | 89 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++y GVr+++ +gr++AeIrdp + + r++lg+f+taeeAa a+++a++ ++g Brast04G186900.1.p 39 PRYLGVRRRP-WGRYAAEIRDPAT---KERHWLGTFDTAEEAAIAYDRAARTIRG 89 6899******.**********843...4***********************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 3.1E-11 | 39 | 89 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.40E-29 | 39 | 98 | No hit | No description |
SuperFamily | SSF54171 | 3.14E-21 | 40 | 97 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 21.298 | 40 | 97 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.4E-29 | 40 | 97 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.2E-32 | 40 | 103 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-8 | 41 | 52 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-8 | 63 | 79 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 245 aa Download sequence Send to blast |
MNFSFFSSSS SSSGKKSAAS KQRRQQEESG KNNNNNTTPR YLGVRRRPWG RYAAEIRDPA 60 TKERHWLGTF DTAEEAAIAY DRAARTIRGA SARTNFAYPD LPPGSSVTPY LSPDIPADQL 120 QQHHFYGNPQ IPALPLPAPA AYQIQGASGH HAGNNNESSY HDMSAAMSCG EVDMYAGGGG 180 DDGTWCDASE LDHLGGSYDE TAGASNGVYF EDGYVHSPMF SPMPAADEAV DAFQLGGSSS 240 SYYY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 8e-18 | 40 | 96 | 14 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast04G186900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP005845 | 1e-84 | AP005845.2 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0461D06. | |||
GenBank | AP014958 | 1e-84 | AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012610 | 1e-84 | CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003572568.1 | 1e-129 | ethylene-responsive transcription factor LEP | ||||
TrEMBL | I1IA28 | 1e-128 | I1IA28_BRADI; Uncharacterized protein | ||||
STRING | BRADI3G44470.1 | 1e-128 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1885 | 33 | 97 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13910.1 | 4e-30 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Brast04G186900.1.p |