PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast04G179500.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family E2F/DP
Protein Properties Length: 467aa    MW: 50780.7 Da    PI: 4.7487
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast04G179500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP85.24.9e-27147212171
             E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 
                         r+++sL+llt+kf++ll+++++gi++ln++a++L   +v  ++RRiYDi+NVLe+++liek+ kn+irwkg
  Brast04G179500.1.p 147 RYDSSLGLLTKKFINLLKQADDGILDLNNAAETL---EV--QKRRIYDITNVLEGIGLIEKTLKNRIRWKG 212
                         6899******************************...99..****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.6E-28145214IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467856.12E-18147210IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013723.1E-34147212IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023193.4E-24149212IPR003316E2F/DP family, winged-helix DNA-binding domain
CDDcd146601.66E-48222328No hitNo description
SuperFamilySSF1440741.91E-33225328No hitNo description
PfamPF164212.7E-33227326IPR032198E2F transcription factor, CC-MB domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008284Biological Processpositive regulation of cell proliferation
GO:0009733Biological Processresponse to auxin
GO:0010090Biological Processtrichome morphogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051302Biological Processregulation of cell division
GO:0051446Biological Processpositive regulation of meiotic cell cycle
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 467 aa     Download sequence    Send to blast
MSGGGRPPAA QKILQSLRPP PVFSAPARPP FASPDDYHRF PAPTPSSATG SGSGGIGAGG  60
VGADIEEGLI IRTPLKRKAT REENDASESS DCMIISPGFT GNKLLTPVSG KAVKTSKSKA  120
KNTKAGPQTP TPNVGSPLNP ATPGTCRYDS SLGLLTKKFI NLLKQADDGI LDLNNAAETL  180
EVQKRRIYDI TNVLEGIGLI EKTLKNRIRW KGLDDSGVEL DNGLSALQTE VEKLNLQEQA  240
LDERISDMRE KLRGLTEDEN SQRWLYVTEE DIKGLPCFQN ETLIAIKAPH GTTLEVPDPD  300
EAGDYLQRRY RIVLRSTMGP IDVYLVSQFD EGFEDLGGAA TPPRHTNVPT HRPPEDFHTT  360
NAAQSSKSMD VEHNIQYSQN TPHDPSSAHD FGGMTRIIPS DVNTDADYWL LTEGDVSITD  420
IWKTAPEVQW DSDVFLPEDV STPRADNQHP VAAGEPRMQV QSMDLP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_A4e-24140213274PROTEIN (TRANSCRIPTION FACTOR E2F-4)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds DNA cooperatively with DP proteins through the E2 recognition site, 5'-TTTC[CG]CGC-3' found in the promoter region of a number of genes whose products are involved in cell cycle regulation or in DNA replication. The binding of retinoblastoma-related proteins represses transactivation. Regulates gene expression both positively and negatively. Activates the expression of E2FB. Involved in the control of cell-cycle progression from G1 to S phase. Stimulates cell proliferation and delays differentiation. {ECO:0000269|PubMed:11669580, ECO:0000269|PubMed:11786543, ECO:0000269|PubMed:11862494, ECO:0000269|PubMed:11889041, ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:12913157, ECO:0000269|PubMed:15377755, ECO:0000269|PubMed:16514015, ECO:0000269|PubMed:19662336}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast04G179500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ2385900.0AJ238590.1 Triticum sp. mRNA for E2F protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003575084.10.0transcription factor E2FA isoform X3
SwissprotQ9FNY01e-128E2FA_ARATH; Transcription factor E2FA
TrEMBLI1IAA40.0I1IAA4_BRADI; Uncharacterized protein
STRINGBRADI3G45130.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62537148
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36010.11e-119E2F transcription factor 3
Publications ? help Back to Top
  1. Magyar Z, et al.
    Arabidopsis E2FA stimulates proliferation and endocycle separately through RBR-bound and RBR-free complexes.
    EMBO J., 2012. 31(6): p. 1480-93
    [PMID:22307083]