PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast04G175300.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MYB_related
Protein Properties Length: 791aa    MW: 83041.4 Da    PI: 10.1694
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast04G175300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.11.9e-08203247244
                         SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHH CS
     Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrw 44 
                         ++W++eEd  l  +v++ G g+W  I ++ +  ++Rt+ q+  rw
  Brast04G175300.1.p 203 KPWSKEEDADLTTGVQKCGEGNWLDILHKYNfdNTRTPIQLSQRW 247
                         68*****************************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.6E-11196253IPR009057Homeodomain-like
PROSITE profilePS5129410.834197256IPR017930Myb domain
SuperFamilySSF466898.97E-13200253IPR009057Homeodomain-like
SMARTSM007172.5E-8201253IPR001005SANT/Myb domain
PfamPF002491.2E-6203247IPR001005SANT/Myb domain
CDDcd116606.05E-17205252No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 791 aa     Download sequence    Send to blast
MAAAPPATGR GKRKRDFSED DVFLILYKYA PATILTALQE VAQHTRGRKI DWRALVAKTT  60
TGITSAREYQ MLWRHFAYGH EFVENVDDSA QPLGDDSDLE CDIEPIPTPR NEDIAEASGF  120
AKLLLYGSSR EQASSHRVNS EVPVQNTPKE KIPRVPSDKQ LNQSHRLTNG TGPVSNLKQT  180
SQTGLSLDPF DGNGPHKKKK KPKPWSKEED ADLTTGVQKC GEGNWLDILH KYNFDNTRTP  240
IQLSQRWALI CKRQGITKLA NAKPVTGNLD KEAAQKAFSL AIGMPMARKA GLPTSRSGAS  300
QQSSQHPLPV LGTTIPELKP ATASSSLSVP GSVTLPVPVP VPVPVHVQQP LPQILQVSAQ  360
APPLKVSNTS SKSRNNKKQG AQQNPVNAPS SIQAAAIAAG GRIATQSDAT NFLKAAQSTK  420
VMHIRTRGTG SSKTSTGSKA STVAGEPGTQ LGSAQHPEPP NSSAPTPSPP VLTTHATEQV  480
NVVSEVTVVN PPEQSAGAHL LETNRTLNTM PLSGPCDNVE MDDDSTFCVV TMEDLFPEDV  540
KQPDIVDLKA EEIIDPKDAD MLEFDRFVAQ GCLNMDYVDK SKNVKIAPEA QGGAGSQKRQ  600
LKQLSAVGKG IPVFSRAAAT GKKSKTLGPN VATFPATGTS SGLIGTGNAG VLSKAVWGKT  660
AGLGTTGKQN RCQEIMAQKQ HTTNSKSNGI PKNAVLSTGT AAKNMAPTTG TPARNVAAGT  720
TGTPARNVAP GTTGTPGRNV ALVTGTPARN SALGTGTSVR NVSPGTGTQA NRHASPAANG  780
SSKGNPPAGQ *
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast04G175300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003572605.10.0uncharacterized protein LOC100823787
TrEMBLI1IAE30.0I1IAE3_BRADI; Uncharacterized protein
STRINGBRADI3G45450.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP46843754
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09710.16e-45MYB_related family protein