PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast04G166600.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 436aa    MW: 45858.5 Da    PI: 5.1096
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast04G166600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.89.4e-14249294555
                         HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         h+++Er RR++i +++ +L+el+P++      K +Ka++Le+ +eYIk Lq
  Brast04G166600.1.p 249 HSIAERLRREKISDRMKNLQELVPNS-----NKTDKASMLEEIIEYIKFLQ 294
                         99***********************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.96E-17242304IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.24E-14242298No hitNo description
PROSITE profilePS5088817.733244293IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.2E-17246303IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.5E-11249294IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.8E-14250299IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 436 aa     Download sequence    Send to blast
MGGFVDPFIP SPAWPQDMVF PGSSWAGSSA QGMGFHLQNG SSPTQLLQSA DDLDYTLGTI  60
LGGAAPCQNV SLADSAPVLC SSSNESSGSA QSGVLPHQFL MGDQHPVPAA WASGYAGISS  120
AMAGEETPRS FGFPGDDLLH EVAAGTNGYQ QLGAVAPAQL QLHDDAEFSA GKLLSFAPGQ  180
QQIRPDIDTL QQEFGSGLRH LNLVPGAQLA PFNPKQCAED GSNGNGASGG GGAPKARVRA  240
RRGQATDPHS IAERLRREKI SDRMKNLQEL VPNSNKTDKA SMLEEIIEYI KFLQLQTKVL  300
SMSRLGATDP LVPLLMESQN ESSGLVLGSP KSGAAAGGRG FAPHRHTDSD DFVEDSVVLE  360
QEVAQMMEDN MTMAMQYLQN RGLCLMPITL ASAISVQKGT SSAAVRPENG GKDDVKSVPT  420
VLPSRKEVKP RPKVA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1235243ARVRARRGQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast04G166600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024318299.10.0uncharacterized protein LOC100834217
TrEMBLA0A0Q3M6210.0A0A0Q3M621_BRADI; Uncharacterized protein
STRINGBRADI3G46200.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32543879
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58010.13e-54LJRHL1-like 3