PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast04G166500.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family Trihelix
Protein Properties Length: 408aa    MW: 43479.7 Da    PI: 6.5323
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast04G166500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix45.71.7e-1466147286
            trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergfer...spkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                         W++  + +Li+a  e+  +l+rg+l+ p+W+ev++++ ++ g+++   s +qCk++++ l+k+yk +k  + +       ++p+fd+l+
  Brast04G166500.1.p  66 WSDGATSTLIDAWGERFVALGRGSLRHPQWQEVAEVVsSRDGYSKppkSDVQCKNRIDTLKKKYKVEKSKSDS-------SWPFFDRLD 147
                         *************************************87889976333778**************99887775.......5******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.8E-2364147No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
MDEDGAASPS PSPSPSRSSS PLPLAEPVTV AAVPPGHLAV AIPIQKPAPS SGGGGGGGGG  60
GREDAWSDGA TSTLIDAWGE RFVALGRGSL RHPQWQEVAE VVSSRDGYSK PPKSDVQCKN  120
RIDTLKKKYK VEKSKSDSSW PFFDRLDYLL APVQKLGSSS GRAAGNSGSS NLAGRTTAVM  180
IPRFNFPTRS RLKRRLPSPP QASASSDSSD GFPPEPPVEA ANGKRQRVEV EEAANGADSS  240
DRVQGLRDLA QAIRRFGEAF ERVEASKREH ELRMERDRLD AARELEDQRV QFFLKMQMEI  300
SKANNGTALG PLAAAAAAMI GNSAPATVAA AADGNGSRRT SMAPDVGTSS NHHVRYRVKD  360
GRHHQSLQRP SYQYNQNNAG EDATGHGSGS NDNKEDDEVE DEEEESQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast04G166500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003575177.10.0trihelix transcription factor ASIL1
TrEMBLA0A0Q3FL410.0A0A0Q3FL41_BRADI; Uncharacterized protein
STRINGBRADI3G46210.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24043069
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11100.18e-41sequence-specific DNA binding transcription factors