PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast04G165400.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family HD-ZIP
Protein Properties Length: 333aa    MW: 36443.7 Da    PI: 6.5117
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast04G165400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.22.9e-18152206256
                         T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
            Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                         rk+ +++keq   Le+ F+++++++ e++  LA++l+L  rqV vWFqNrRa+ k
  Brast04G165400.1.p 152 RKKLRLSKEQSASLEDSFKEHSTLTLEQKSNLANRLNLRPRQVEVWFQNRRARTK 206
                         678899***********************************************98 PP
2HD-ZIP_I/II120.49.4e-39152239188
         HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 
                         +kk+rlskeq+++LE+sF+e+++L+ e+K++la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l++en+rL++ev+eLr
  Brast04G165400.1.p 152 RKKLRLSKEQSASLEDSFKEHSTLTLEQKSNLANRLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTRENRRLQREVAELR 239
                         69************************************************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.6E-17136206IPR009057Homeodomain-like
SuperFamilySSF466891.07E-17144209IPR009057Homeodomain-like
PROSITE profilePS5007117.297148208IPR001356Homeobox domain
SMARTSM003891.9E-14150212IPR001356Homeobox domain
CDDcd000862.86E-16152209No hitNo description
PfamPF000461.5E-15152206IPR001356Homeobox domain
PROSITE patternPS000270183206IPR017970Homeobox, conserved site
SMARTSM003404.6E-20208252IPR003106Leucine zipper, homeobox-associated
PfamPF021839.8E-11208239IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MELELSLGDS PAPVNATITP APAPTRTGVV EDHELVLGLG VTANERVGED NQRTSTPRAE  60
TVYGEDDEAS HQSESPMEAS LSCPLRLVCA QTGSADSEVC RRGLDVNTVP VDDGGSTPRS  120
LSPSSMQVEV AVRQAVDQEA SEDEENGGGR VRKKLRLSKE QSASLEDSFK EHSTLTLEQK  180
SNLANRLNLR PRQVEVWFQN RRARTKLKQT EVDCEYLKRC CETLTRENRR LQREVAELRT  240
FRPTPTYPFY THPHHLSGVS STALPGCPSC DDNKKATIYY APPVVATPAS ITTVSSPGQR  300
SLPSSTLPSL FARPHFAPFT IHPVLRRQPS AS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1149155RVRKKLR
2200208RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast04G165400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014755648.10.0homeobox-leucine zipper protein HOX7
RefseqXP_024318098.10.0homeobox-leucine zipper protein HOX7
SwissprotQ0E0A61e-111HOX7_ORYSJ; Homeobox-leucine zipper protein HOX7
TrEMBLA0A0Q3I2750.0A0A0Q3I275_BRADI; Uncharacterized protein
STRINGBRADI3G46320.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP128943035
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.13e-49homeobox from Arabidopsis thaliana
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]