PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast04G162600.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C2H2
Protein Properties Length: 384aa    MW: 40628.6 Da    PI: 6.9659
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast04G162600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H221.46.5e-07169190223
                         EETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                          C +Cgk F+r  nL+ H+r H
  Brast04G162600.1.p 169 FCDICGKGFRRDANLRMHMRAH 190
                         6*******************99 PP
2zf-C2H212.40.00047254278123
                         EEETTTT..EEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCg..ksFsrksnLkrHirtH 23 
                         y C+ Cg  k+F    +L++H+r +
  Brast04G162600.1.p 254 YACERCGgkKRFAVLADLRSHLRHC 278
                         89********************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.54E-6165190No hitNo description
PROSITE profilePS5015711.614168190IPR007087Zinc finger, C2H2
SMARTSM003550.0019168190IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.5E-6170190IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280170190IPR007087Zinc finger, C2H2
SMARTSM00355180216249IPR015880Zinc finger, C2H2-like
SMARTSM0035517254277IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MEGSTTNQLA GAAARVGASS ANSAPLSAMP RGELADALIG AGVGGGDGDP RAALQRLAAL  60
GDRMAAVRHR LAASISGESQ PLSSSDIQSV SSEISSAAHL VVLNAANLLS SSLPFLAPPP  120
PPAAPAPVQE LPAAASTAEE LPREATKGDG GYDVVELDAE ELLAEHVHFC DICGKGFRRD  180
ANLRMHMRAH GDRFKTLDAL SRPGQAKPAT GGDVRFSCPF AGCNRNRAHR RFRPLKSAVC  240
TRNHFRRSHC PKLYACERCG GKKRFAVLAD LRSHLRHCGE EAQWRCSCGT TFSRKDKLFG  300
HLALFEGQGH MPAISAPNKD VVTASTEASL DMMEEGGLEE NCGRENGDEG SFDPEFFKEW  360
VDELRDGAGP VGGTNWPGPA ARQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast04G162600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010235579.10.0protein SENSITIVE TO PROTON RHIZOTOXICITY 1
RefseqXP_024318114.10.0protein SENSITIVE TO PROTON RHIZOTOXICITY 1
TrEMBLI1IAT20.0I1IAT2_BRADI; Uncharacterized protein
STRINGBRADI3G46570.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125503236
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34370.33e-59C2H2 family protein