PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast04G145900.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 308aa    MW: 31847.1 Da    PI: 7.1516
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast04G145900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.88.1e-13241288655
                         HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                         +++Er RR ri +++ +L++l+P+ +   + +  s +++L +Ave+Ik Lq
  Brast04G145900.1.p 241 SIAERERRTRISEKLRKLQDLVPNmD---KVEQTSTSDMLDLAVEHIKGLQ 288
                         689*********************88...9999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.361235287IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.07E-14238300IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.38E-13239292No hitNo description
Gene3DG3DSA:4.10.280.102.5E-14240301IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.8E-10241288IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-12241293IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MRRFLPGGGG EPSSSSSSGP PHGDQHAAGN DGGLRYGGGD ISLGRGHDQQ QLHFRGGGGG  60
EPEMKGADDG ADLLARHSSS PAGFFSNLMV DDGGFAGSRA GAAGAEGHRS SMKMKSQLGF  120
TAASHLSRIS EGAALFPGAA AAAAGHSHSG GSGGEHGAVS RSFSAGGGGG FSIVGPWDES  180
RDIIGTLDLG GYESQFGGMA SSSSLELAGM DKYMQAQQQQ QQDQVAFKVR AKRGCATHPR  240
SIAERERRTR ISEKLRKLQD LVPNMDKVEQ TSTSDMLDLA VEHIKGLQSQ LQAMKNEQDK  300
CTCCSKP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast04G145900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2499541e-140AK249954.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf51f14, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010235663.11e-125transcription factor bHLH128
TrEMBLA0A446VFW21e-128A0A446VFW2_TRITD; Uncharacterized protein
STRINGTraes_6DL_62A15AED6.21e-121(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115313141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05805.18e-39bHLH family protein