PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast04G141500.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family CO-like
Protein Properties Length: 324aa    MW: 34009.8 Da    PI: 5.3897
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast04G141500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box18.54.3e-062461337
            zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg...H 37
                        +r C+++    ++l+C++++ +lC+ C    H     H
  Brast04G141500.1.p 24 ARPCDTCCVDAARLYCRSDGAYLCAGCDARAHAAgsrH 61
                        578****9988*****************9999545556 PP
2zf-B_box25.62.5e-0864109342
            zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 
                          + C+ +e+ ++   C+ +   lC+ C   +H+       H++vp+
  Brast04G141500.1.p  64 VWLCEVCEQAPAAVTCRADAAALCAACDADIHSAnplagrHERVPV 109
                         679*****************************66999999999986 PP
3CCT69.31e-23243285143
                 CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 
                         Rea+l+RY+eKrk+R+F K+irY+sRKa+Ae+RpR+KGrF+k+
  Brast04G141500.1.p 243 REARLMRYREKRKNRRFHKTIRYASRKAYAETRPRIKGRFAKR 285
                         9****************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512575117No hitNo description
PROSITE profilePS5011910.5092266IPR000315B-box-type zinc finger
SMARTSM003360.00442266IPR000315B-box-type zinc finger
CDDcd000212.87E-52566No hitNo description
PROSITE profilePS5011910.23962109IPR000315B-box-type zinc finger
PfamPF006431.2E-664109IPR000315B-box-type zinc finger
SMARTSM003363.0E-967109IPR000315B-box-type zinc finger
PfamPF062034.8E-18243285IPR010402CCT domain
PROSITE profilePS5101716.718243285IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MKAEGMPVVA GGGAGGCWGQ QQGARPCDTC CVDAARLYCR SDGAYLCAGC DARAHAAGSR  60
HARVWLCEVC EQAPAAVTCR ADAAALCAAC DADIHSANPL AGRHERVPVA PFFGALAEAH  120
AHAAPAQKEE EDDGGNEEAE AASWLLPEPG DSSPEEDTAA AFFADADAYL GLDLDFVRSM  180
DGIKAIGVPV ASSELDLAGH GALFYPDHST NHSVSSSEVA VVPDALSVGE AAPSVVVSRG  240
KDREARLMRY REKRKNRRFH KTIRYASRKA YAETRPRIKG RFAKRTGTGN ADEDALEHDH  300
GPFSPAVSAL VASDGDYGIV PSF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast04G141500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010235683.11e-158zinc finger protein CONSTANS-LIKE 3
TrEMBLF2DY411e-158F2DY41_HORVV; Predicted protein
STRINGBRADI3G48447.11e-156(Brachypodium distachyon)
STRINGEMT222811e-156(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21913272
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24790.13e-41CONSTANS-like 3