PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast04G136000.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MYB
Protein Properties Length: 278aa    MW: 30888.2 Da    PI: 4.9794
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast04G136000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.75.5e-181562148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+WT++Ed+ll+++v+q G g+W+++a+  g++R++k+c++rw +yl
  Brast04G136000.1.p 15 KGPWTAQEDKLLLEYVRQQGDGRWNSVAKLTGLKRSGKSCRLRWVNYL 62
                        79********************************************97 PP
2Myb_DNA-binding48.52.1e-1568112147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         rg+ T++E+  +++++ ++G++ W+tIar ++ gRt++++k++w+++
  Brast04G136000.1.p  68 RGKITPQEERVILELHGLWGNR-WSTIARSLP-GRTDNEIKNYWRTH 112
                         8999******************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.3941062IPR017930Myb domain
SuperFamilySSF466891.31E-2913109IPR009057Homeodomain-like
SMARTSM007172.2E-151464IPR001005SANT/Myb domain
PfamPF002493.0E-171562IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.8E-241669IPR009057Homeodomain-like
CDDcd001676.06E-111762No hitNo description
PROSITE profilePS5129425.04263117IPR017930Myb domain
SMARTSM007171.2E-1467115IPR001005SANT/Myb domain
PfamPF002493.2E-1368112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.5E-2370115IPR009057Homeodomain-like
CDDcd001672.08E-972113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MEQFGWGREE GGWRKGPWTA QEDKLLLEYV RQQGDGRWNS VAKLTGLKRS GKSCRLRWVN  60
YLRPDLKRGK ITPQEERVIL ELHGLWGNRW STIARSLPGR TDNEIKNYWR THFKKGKPTS  120
KNIERARARF LKQRREIMEG YPHGQDDADD GIPASVDNTG CAAAAATARH DADEATVRPA  180
PTTTHEQDED LEVVMPDMDE FLQYHPMSAY FLQGCCGEGA TISASASDAG SSGEIDGGAT  240
WGSLWNLDDD DVVLDDVDLV GGGGSACFWD SFGLAFY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-27151157106B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast04G136000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0992831e-159AK099283.1 Oryza sativa Japonica Group cDNA clone:J023132O17, full insert sequence.
GenBankAK1118071e-159AK111807.1 Oryza sativa Japonica Group cDNA clone:J013104N22, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003572719.11e-153myb-related protein Zm38
TrEMBLA0A0Q3M7E71e-152A0A0Q3M7E7_BRADI; Uncharacterized protein
STRINGTraes_6DL_FDFCBA57D.11e-125(Triticum aestivum)
STRINGTraes_6DL_FDFCBA57D1.11e-125(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32433584
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13480.14e-65myb domain protein 79