PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast04G132600.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MYB
Protein Properties Length: 254aa    MW: 27846.9 Da    PI: 6.9493
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast04G132600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.26.9e-171461148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        rg+WT+eEd  lv  ++q+G  +W++ ++  g+ R++k+c++rw +yl
  Brast04G132600.1.p 14 RGPWTAEEDRTLVAHIEQHGHSNWRALPKQAGLLRCGKSCRLRWINYL 61
                        89******************************99************97 PP
2Myb_DNA-binding49.88.2e-1667111147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         rg++T eE++ +++++ +lG++ W++Ia++++ gRt++++k+ w+++
  Brast04G132600.1.p  67 RGNFTREEEDAIIQLHDMLGNR-WSAIAARLP-GRTDNEIKNVWHTH 111
                         89********************.*********.***********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.4E-25564IPR009057Homeodomain-like
PROSITE profilePS5129415.832961IPR017930Myb domain
SuperFamilySSF466891.54E-3010108IPR009057Homeodomain-like
SMARTSM007171.8E-131363IPR001005SANT/Myb domain
PfamPF002491.1E-141461IPR001005SANT/Myb domain
CDDcd001675.00E-111661No hitNo description
PROSITE profilePS5129425.58662116IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.1E-2665116IPR009057Homeodomain-like
SMARTSM007175.9E-1466114IPR001005SANT/Myb domain
PfamPF002491.2E-1467111IPR001005SANT/Myb domain
CDDcd001672.74E-1069112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MGRAPCCEKM GLKRGPWTAE EDRTLVAHIE QHGHSNWRAL PKQAGLLRCG KSCRLRWINY  60
LRPDIKRGNF TREEEDAIIQ LHDMLGNRWS AIAARLPGRT DNEIKNVWHT HIKKRLEGKP  120
SGKTTGAPAK RKAKKHVAPV NTTLQQQQQG PASSVPVSQE QSLSTSSSTD NDSMASSLEN  180
TGSSASDSHE FQIDDSFWSE TLAMAVDSSS GSGMEAGDSF DADSASPSSS NDEMDFWVKL  240
FMQAGDMQSL SQI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-27121175109B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of cold tolerance. Negatively regulates beta-amylase genes at the transcriptional level in response to cold stress. Suppresses beta-amylase gene expression by interacting with TIFY11A/JAZ9. Maltose produced by beta-amylases has a role in protecting cell membranes under cold stress conditions in rice and may contribute to the cold tolerance as a compatible solute. {ECO:0000269|PubMed:28062835}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast04G132600.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by cold stress and flooding. {ECO:0000269|PubMed:28062835}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM0719211e-139HM071921.1 Leymus racemosus Myb3 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003575392.11e-171transcription factor MYB30
SwissprotQ6K1S61e-109MYB30_ORYSJ; Transcription factor MYB30
TrEMBLI1IBQ81e-170I1IBQ8_BRADI; Uncharacterized protein
STRINGBRADI3G49190.11e-171(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP7938563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23250.12e-79myb domain protein 15
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yilmaz A, et al.
    GRASSIUS: a platform for comparative regulatory genomics across the grasses.
    Plant Physiol., 2009. 149(1): p. 171-80
    [PMID:18987217]
  3. Lv Y, et al.
    The OsMYB30 Transcription Factor Suppresses Cold Tolerance by Interacting with a JAZ Protein and Suppressing β-Amylase Expression.
    Plant Physiol., 2017. 173(2): p. 1475-1491
    [PMID:28062835]