PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast04G131100.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ARF
Protein Properties Length: 681aa    MW: 73336.5 Da    PI: 7.4725
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast04G131100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B376.14e-24119220199
                         EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                         f k+lt+sd+++ g +++p+ +ae++         ++ +  t++ +d +g sW++++iyr++++r++lt+GW+ Fv+ ++L +gD++vF  
  Brast04G131100.1.p 119 FAKTLTQSDANNGGGFSVPRYCAETIfprldysADPPVQ--TVVAKDVHGASWKFRHIYRGTPRRHLLTTGWSAFVNHKKLVAGDSIVFL- 206
                         89****************************996555555..8************************************************. PP

                         -SSSEE..EEEEE-S CS
                  B3  85 dgrsefelvvkvfrk 99 
                          + +++ l+v+++r+
  Brast04G131100.1.p 207 -RGDGGDLHVGIRRA 220
                         .3488999*****97 PP
2Auxin_resp117.88.7e-39266349183
          Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                         aa+ a ++++FevvY+Prast+eF+v+++ v++a++v++++GmRfkmafetedss++++ +Gtv+gv+ +dp+rWp+S+Wr+L+
  Brast04G131100.1.p 266 AARLAGSGQPFEVVYYPRASTPEFCVRAAAVRAAMRVQWCPGMRFKMAFETEDSSRISWfMGTVAGVQVADPIRWPQSPWRLLQ 349
                         6778899***************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.0E-38111222IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.27E-29114225IPR015300DNA-binding pseudobarrel domain
CDDcd100171.32E-22118219No hitNo description
PROSITE profilePS5086312.816119221IPR003340B3 DNA binding domain
PfamPF023628.3E-22119220IPR003340B3 DNA binding domain
SMARTSM010191.2E-21119221IPR003340B3 DNA binding domain
PfamPF065072.4E-33266349IPR010525Auxin response factor
PROSITE profilePS5174511.585594674IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 681 aa     Download sequence    Send to blast
MITFGDLTDP APAERCVDRQ LWLACAGGMC TVPPVGSSVY YFPQGHAEHA LGLAAGPGAG  60
LSRVPALLPC RVAAVRYMAD TDTDEVFAGI RLAPLRARDD GAQDDGAAAD DEHEKPASFA  120
KTLTQSDANN GGGFSVPRYC AETIFPRLDY SADPPVQTVV AKDVHGASWK FRHIYRGTPR  180
RHLLTTGWSA FVNHKKLVAG DSIVFLRGDG GDLHVGIRRA KRGFCGAEEG SGWENQLYTA  240
GPMRGGNASP CKGRRGKARA EDVAEAARLA GSGQPFEVVY YPRASTPEFC VRAAAVRAAM  300
RVQWCPGMRF KMAFETEDSS RISWFMGTVA GVQVADPIRW PQSPWRLLQV TWDEPDLLQN  360
VKRVSPWLVE LVSSMPAIHL ASSFSPPRKK PRIPAYPEFP FEGQLLNPSF PLNLMAHGHH  420
HHYHHTQSYH PSFFPFPDGS APAGIQGARH AQFGPSLPDL PLTHLQSSLL NPGLRRHDHL  480
SPALVQPRIS TDLTIGSNGV SSTLPGDGAK KPKPSSGLVL FGQTILTEQQ MSSRSESAGA  540
TSPAASGNSS LNCDTEKAGN VSEGSGSGVI QNASPERLRW FGDGSSISEL GLEPGQCKVF  600
VESETVGRNL DLSAMSSFEE LYGRLSELFC IDRAELRSRV LYRGATGQVK HAGDESFSDF  660
IKSARRLTIL ADAGSDNLGS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A6e-811737051388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast04G131100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2432300.0AK243230.1 Oryza sativa Japonica Group cDNA, clone: J100044L04, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003575407.20.0auxin response factor 8
SwissprotQ6K2230.0ARFH_ORYSJ; Auxin response factor 8
TrEMBLA0A2K2D4900.0A0A2K2D490_BRADI; Auxin response factor
STRINGBRADI3G49320.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51637152
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16