PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Brast04G127500.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
|
||||||||
Family | TCP | ||||||||
Protein Properties | Length: 196aa MW: 20600.3 Da PI: 10.443 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 117 | 2.3e-36 | 45 | 161 | 2 | 89 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg.... 88 a++k++ +++h+kv+gR+RRvR+++ caar+F+L++eLG+++d++tieWLl+qa+p+i ++tg+++ +a ++++++ sss+s++ g Brast04G127500.1.p 45 APGKKSVKDRHSKVNGRGRRVRMPIVCAARVFQLTRELGLKSDGQTIEWLLRQAEPSILAATGSGTAPAAFVSSSAPSSSSSHH--Gallg 133 889*************************************************************99999777333333333322..13356 PP TCP 89 ...........................k 89 Brast04G127500.1.p 134 krprqdyeafwapalprqdawgfspleT 161 6666777778887766665555544321 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.3E-30 | 50 | 142 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 26.428 | 51 | 105 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 196 aa Download sequence Send to blast |
MGSRDIAAAG SIFHVYQQHL PMAASTALAP AAAEAADGAL LLSPAPGKKS VKDRHSKVNG 60 RGRRVRMPIV CAARVFQLTR ELGLKSDGQT IEWLLRQAEP SILAATGSGT APAAFVSSSA 120 PSSSSSHHGA LLGKRPRQDY EAFWAPALPR QDAWGFSPLE TQAASYMPMA QAHHHSLSLV 180 AALSGAARRA EEETR* |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00655 | PBM | Transfer from LOC_Os02g42380 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Brast04G127500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_003572742.1 | 4e-92 | transcription factor TCP7 | ||||
TrEMBL | I1IBW4 | 1e-90 | I1IBW4_BRADI; Uncharacterized protein | ||||
STRING | BRADI3G49660.1 | 2e-91 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1941 | 33 | 100 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G23280.1 | 2e-33 | TCP family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Brast04G127500.1.p |