PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast04G124600.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MYB
Protein Properties Length: 307aa    MW: 33051.7 Da    PI: 6.0742
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast04G124600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.97.3e-161562148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g W++eEd++l d++ ++G g+W++ ++++g+ R +k+c++rw +yl
  Brast04G124600.1.p 15 KGLWSPEEDQKLRDYILRHGHGCWSALPAKIGLQRNGKSCRLRWINYL 62
                        678*******************************************97 PP
2Myb_DNA-binding49.78.5e-1669113248
                         SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         g +++ E+e    +++ lG++ W++Iar+++ gRt++++k++w++yl
  Brast04G124600.1.p  69 GMFSPAEEETVMSLHAALGNK-WSRIARHLP-GRTDNEVKNYWNSYL 113
                         5699*****************.*********.*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.1151062IPR017930Myb domain
SuperFamilySSF466893.37E-2812109IPR009057Homeodomain-like
SMARTSM007171.3E-111464IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.5E-211461IPR009057Homeodomain-like
PfamPF002494.5E-141562IPR001005SANT/Myb domain
CDDcd001675.20E-111862No hitNo description
Gene3DG3DSA:1.10.10.608.6E-2562117IPR009057Homeodomain-like
PROSITE profilePS5129424.12163117IPR017930Myb domain
SMARTSM007178.2E-1367115IPR001005SANT/Myb domain
PfamPF002492.8E-1469113IPR001005SANT/Myb domain
CDDcd001677.85E-1171113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0010018Biological Processfar-red light signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MGCKACEKPR PNYRKGLWSP EEDQKLRDYI LRHGHGCWSA LPAKIGLQRN GKSCRLRWIN  60
YLRPGLKHGM FSPAEEETVM SLHAALGNKW SRIARHLPGR TDNEVKNYWN SYLKKRVESG  120
KQGPDATPPT AADSAADSDG SQSPNPTGET AQEPASRPSK SGSSEPHHES YSSADSSCLT  180
MTEPPPPPSA CRPHAPVAPK VMFADWLDMD YINGGQMSAA APGLVDAAGA VGAAASASPG  240
DHHHQAVMSQ GSVQVDGPPC SVDDSLHGFG DNGTCWEFQE QFDSMDQMQV GSFCDLLSVN  300
EFFGLD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-25111193110B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast04G124600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003569964.10.0transcription factor LAF1
TrEMBLI1IC030.0I1IC03_BRADI; Uncharacterized protein
STRINGBRADI3G49970.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP170737109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52260.17e-57myb domain protein 19