PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast04G123400.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | NAC | ||||||||
Protein Properties | Length: 352aa MW: 39815.4 Da PI: 6.6765 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 179.7 | 7.7e-56 | 7 | 136 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvka.eekewyfFskrdkkyatgkrknratksgyWkatgk 88 +ppGfrFhPtdeelv++yL+kkv++kk++l +vik+vd+yk+ePwdL+ k k+ e+++wyfFs++dkky+tg+r+nrat +g+Wkatg+ Brast04G123400.1.p 7 VPPGFRFHPTDEELVDYYLRKKVASKKIDL-DVIKDVDLYKIEPWDLQdKcKIGMeEQSDWYFFSHKDKKYPTGTRTNRATGAGFWKATGR 96 69****************************.9***************9434444324559******************************* PP NAM 89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 dk++++ ++ lvg++ktLvfykgrap+g+k+dW+mheyrle Brast04G123400.1.p 97 DKPIYT-NNCLVGMRKTLVFYKGRAPNGQKSDWIMHEYRLE 136 ******.999*****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 5.23E-62 | 5 | 156 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 60.089 | 7 | 156 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.8E-28 | 8 | 135 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 352 aa Download sequence Send to blast |
MDTFSHVPPG FRFHPTDEEL VDYYLRKKVA SKKIDLDVIK DVDLYKIEPW DLQDKCKIGM 60 EEQSDWYFFS HKDKKYPTGT RTNRATGAGF WKATGRDKPI YTNNCLVGMR KTLVFYKGRA 120 PNGQKSDWIM HEYRLETNEN GATPEEGWVV CRVFKKRVAT VRRMADSSPC WFDDHGSGAF 180 MPDLDSPRQL GYHHQNVAAY HSQQQQQLYH CKPELEYHHL LPQEAFLQQL PHLESPKPQA 240 YIGQGSSNIL STTGNLLAHD GGASRPSVQQ PPMDQSLYMA AAGDTSATDW RLLDKFVASQ 300 LFSHGDTNPK DPSYSGETEQ LFQAENKHEE ALDYASTSAG GSGGGESRLW K* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-52 | 7 | 157 | 17 | 166 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-52 | 7 | 157 | 17 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-52 | 7 | 157 | 17 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-52 | 7 | 157 | 17 | 166 | NO APICAL MERISTEM PROTEIN |
4dul_A | 3e-52 | 7 | 157 | 17 | 166 | NAC domain-containing protein 19 |
4dul_B | 3e-52 | 7 | 157 | 17 | 166 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:25148240}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast04G123400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JQ693424 | 0.0 | JQ693424.1 Brachypodium distachyon SWN3 (SWN3) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001266811.1 | 0.0 | uncharacterized protein LOC100832773 | ||||
Refseq | XP_010233638.1 | 0.0 | uncharacterized protein LOC100832773 isoform X1 | ||||
Swissprot | Q9FWX2 | 1e-120 | NAC7_ARATH; NAC domain-containing protein 7 | ||||
TrEMBL | I1IC13 | 0.0 | I1IC13_BRADI; SWN3 | ||||
STRING | BRADI3G50067.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2370 | 38 | 92 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G12260.1 | 1e-100 | NAC 007 |
Link Out ? help Back to Top | |
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Phytozome | Brast04G123400.1.p |
Publications ? help Back to Top | |||
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